miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 5' -58.3 NC_006151.1 + 37029 0.67 0.728455
Target:  5'- cGCCgcgcGGcgcUCGGCCUCcUCCuCGUCCUCg -3'
miRNA:   3'- -UGGa---CU---AGCUGGAGuAGGcGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 37976 0.67 0.728455
Target:  5'- cGCCUGcGUCcuGGCCUgCcgCgGCGUCCUCg -3'
miRNA:   3'- -UGGAC-UAG--CUGGA-GuaGgCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 105466 0.67 0.728455
Target:  5'- cCCUGggCGACUUCuUCCGCgacgccgguGCCgUCg -3'
miRNA:   3'- uGGACuaGCUGGAGuAGGCG---------CGGgAG- -5'
29632 5' -58.3 NC_006151.1 + 83916 0.67 0.718658
Target:  5'- cGCCUGcgccgCGACC-CGUCCGCGUacggcgagagUCUCu -3'
miRNA:   3'- -UGGACua---GCUGGaGUAGGCGCG----------GGAG- -5'
29632 5' -58.3 NC_006151.1 + 99736 0.68 0.708788
Target:  5'- gGCgCUcGUCGACCUCGccgccgCCGCGgaCCUCg -3'
miRNA:   3'- -UG-GAcUAGCUGGAGUa-----GGCGCg-GGAG- -5'
29632 5' -58.3 NC_006151.1 + 89867 0.68 0.708788
Target:  5'- ---cGGUCG-CCUCGUagaCGCGCCgCUCg -3'
miRNA:   3'- uggaCUAGCuGGAGUAg--GCGCGG-GAG- -5'
29632 5' -58.3 NC_006151.1 + 126168 0.68 0.702836
Target:  5'- gGCCUGGUCGcggccuuccuggccuACCggcaCAUCuCGCGCCUg- -3'
miRNA:   3'- -UGGACUAGC---------------UGGa---GUAG-GCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 114230 0.68 0.702836
Target:  5'- uCCUGGccUCGGuggccgcgcgggaccCCUCGgagCGCGCCCUCg -3'
miRNA:   3'- uGGACU--AGCU---------------GGAGUag-GCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 49645 0.68 0.698855
Target:  5'- gGCCguggaggaGGUCGAgcCCUCcgggCCGCGCCCg- -3'
miRNA:   3'- -UGGa-------CUAGCU--GGAGua--GGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 139134 0.68 0.692869
Target:  5'- cGCCccgugCGcCCUCGUcuucccgcuguacgcCCGCGCCCUCg -3'
miRNA:   3'- -UGGacua-GCuGGAGUA---------------GGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 61860 0.68 0.688867
Target:  5'- cCCUGAugcUCGGCg-CGUCUGCGCCUg- -3'
miRNA:   3'- uGGACU---AGCUGgaGUAGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 38237 0.68 0.678833
Target:  5'- cGCCUG---GACCUacgCCGCGgCCCUCu -3'
miRNA:   3'- -UGGACuagCUGGAguaGGCGC-GGGAG- -5'
29632 5' -58.3 NC_006151.1 + 78778 0.68 0.678833
Target:  5'- uCCUGAccgccuUCGGCgaCUCGcCCGCGgCCCUCc -3'
miRNA:   3'- uGGACU------AGCUG--GAGUaGGCGC-GGGAG- -5'
29632 5' -58.3 NC_006151.1 + 103244 0.68 0.678833
Target:  5'- gACCUGcugCGGCa-CAUCCGCGCCa-- -3'
miRNA:   3'- -UGGACua-GCUGgaGUAGGCGCGGgag -5'
29632 5' -58.3 NC_006151.1 + 1664 0.68 0.668761
Target:  5'- gACCgGGaCGAuCCUCcgCCGCcgaGCCCUCc -3'
miRNA:   3'- -UGGaCUaGCU-GGAGuaGGCG---CGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 75540 0.69 0.648538
Target:  5'- cACCUGcgUGGCCUgGUacaCGCGCUuCUCg -3'
miRNA:   3'- -UGGACuaGCUGGAgUAg--GCGCGG-GAG- -5'
29632 5' -58.3 NC_006151.1 + 58504 0.69 0.648538
Target:  5'- uGCCcgcgcgcgGGcCGGCCUCGUCCuCGUCCUCc -3'
miRNA:   3'- -UGGa-------CUaGCUGGAGUAGGcGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 57244 0.69 0.628264
Target:  5'- ---cGcgCGGCCUCggcGUCCGCgcgGCCCUCg -3'
miRNA:   3'- uggaCuaGCUGGAG---UAGGCG---CGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 102359 0.69 0.618127
Target:  5'- gGCCggcGA-CGACg-CGUCCGCGCCCg- -3'
miRNA:   3'- -UGGa--CUaGCUGgaGUAGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 100630 0.69 0.618127
Target:  5'- gACCUGGUCagcGCCgcgCugcgCCGCGCCgUCg -3'
miRNA:   3'- -UGGACUAGc--UGGa--Gua--GGCGCGGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.