miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 5' -58.3 NC_006151.1 + 61860 0.68 0.688867
Target:  5'- cCCUGAugcUCGGCg-CGUCUGCGCCUg- -3'
miRNA:   3'- uGGACU---AGCUGgaGUAGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 62440 0.7 0.547853
Target:  5'- cGCCUGGUCcgcGCCUgCAUcgcccaCCGCGCCCg- -3'
miRNA:   3'- -UGGACUAGc--UGGA-GUA------GGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 65878 0.7 0.587808
Target:  5'- aGCCauugGGUCagcagGGCCUCGUCCGCcUCCUCc -3'
miRNA:   3'- -UGGa---CUAG-----CUGGAGUAGGCGcGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 67163 0.66 0.785205
Target:  5'- gACCUGGUU--CCUgGUCCcgcucauCGCCCUCg -3'
miRNA:   3'- -UGGACUAGcuGGAgUAGGc------GCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 71340 0.72 0.443532
Target:  5'- cGCC-GA-CGACCUCG-CCGUGgCCCUCg -3'
miRNA:   3'- -UGGaCUaGCUGGAGUaGGCGC-GGGAG- -5'
29632 5' -58.3 NC_006151.1 + 73075 0.66 0.794242
Target:  5'- gGCUgUGGUCGAacaucagccccuCCUCG-CCGUGCaCCUCg -3'
miRNA:   3'- -UGG-ACUAGCU------------GGAGUaGGCGCG-GGAG- -5'
29632 5' -58.3 NC_006151.1 + 73276 0.67 0.751616
Target:  5'- uGCCggcGUUGACCgugcggcgcagguagUCGUCCGCGUCCg- -3'
miRNA:   3'- -UGGac-UAGCUGG---------------AGUAGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 75540 0.69 0.648538
Target:  5'- cACCUGcgUGGCCUgGUacaCGCGCUuCUCg -3'
miRNA:   3'- -UGGACuaGCUGGAgUAg--GCGCGG-GAG- -5'
29632 5' -58.3 NC_006151.1 + 76124 0.72 0.434594
Target:  5'- cAUCUGGUCGGCCgug-CCGCGCUCg- -3'
miRNA:   3'- -UGGACUAGCUGGaguaGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 78778 0.68 0.678833
Target:  5'- uCCUGAccgccuUCGGCgaCUCGcCCGCGgCCCUCc -3'
miRNA:   3'- uGGACU------AGCUG--GAGUaGGCGC-GGGAG- -5'
29632 5' -58.3 NC_006151.1 + 83916 0.67 0.718658
Target:  5'- cGCCUGcgccgCGACC-CGUCCGCGUacggcgagagUCUCu -3'
miRNA:   3'- -UGGACua---GCUGGaGUAGGCGCG----------GGAG- -5'
29632 5' -58.3 NC_006151.1 + 86261 0.66 0.803135
Target:  5'- gGCCgUGGUCGACgaCGaCCGCGgcCCCUUc -3'
miRNA:   3'- -UGG-ACUAGCUGgaGUaGGCGC--GGGAG- -5'
29632 5' -58.3 NC_006151.1 + 89867 0.68 0.708788
Target:  5'- ---cGGUCG-CCUCGUagaCGCGCCgCUCg -3'
miRNA:   3'- uggaCUAGCuGGAGUAg--GCGCGG-GAG- -5'
29632 5' -58.3 NC_006151.1 + 97390 0.72 0.480281
Target:  5'- ----cGUCGGCCUCGUCCGUGCCgUg -3'
miRNA:   3'- uggacUAGCUGGAGUAGGCGCGGgAg -5'
29632 5' -58.3 NC_006151.1 + 97843 0.66 0.820458
Target:  5'- cACgUGcgCGcgcagcGCgUCGUCCGCGUUCUCg -3'
miRNA:   3'- -UGgACuaGC------UGgAGUAGGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 99736 0.68 0.708788
Target:  5'- gGCgCUcGUCGACCUCGccgccgCCGCGgaCCUCg -3'
miRNA:   3'- -UG-GAcUAGCUGGAGUa-----GGCGCg-GGAG- -5'
29632 5' -58.3 NC_006151.1 + 99791 0.66 0.785205
Target:  5'- cACCUcGAggcauggcCGACC-CGUCCuucGCGCCCUUc -3'
miRNA:   3'- -UGGA-CUa-------GCUGGaGUAGG---CGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 100630 0.69 0.618127
Target:  5'- gACCUGGUCagcGCCgcgCugcgCCGCGCCgUCg -3'
miRNA:   3'- -UGGACUAGc--UGGa--Gua--GGCGCGGgAG- -5'
29632 5' -58.3 NC_006151.1 + 102359 0.69 0.618127
Target:  5'- gGCCggcGA-CGACg-CGUCCGCGCCCg- -3'
miRNA:   3'- -UGGa--CUaGCUGgaGUAGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 103244 0.68 0.678833
Target:  5'- gACCUGcugCGGCa-CAUCCGCGCCa-- -3'
miRNA:   3'- -UGGACua-GCUGgaGUAGGCGCGGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.