miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 5' -58.3 NC_006151.1 + 1664 0.68 0.668761
Target:  5'- gACCgGGaCGAuCCUCcgCCGCcgaGCCCUCc -3'
miRNA:   3'- -UGGaCUaGCU-GGAGuaGGCG---CGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 4817 0.7 0.577756
Target:  5'- gGCCUGGcggacgUCGuCCUCGUCCcagaGC-CCCUCg -3'
miRNA:   3'- -UGGACU------AGCuGGAGUAGG----CGcGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 12079 0.67 0.748751
Target:  5'- gGCCUcccCGACCUCucucacccgcccucCCGCGCUCUCu -3'
miRNA:   3'- -UGGAcuaGCUGGAGua------------GGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 32239 0.66 0.803135
Target:  5'- uCCUGGccgcggCGACCgCcgCCGCcGCUCUCg -3'
miRNA:   3'- uGGACUa-----GCUGGaGuaGGCG-CGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 37029 0.67 0.728455
Target:  5'- cGCCgcgcGGcgcUCGGCCUCcUCCuCGUCCUCg -3'
miRNA:   3'- -UGGa---CU---AGCUGGAGuAGGcGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 37196 0.67 0.757318
Target:  5'- gGCCc--UCGGCCUCcUCCGCcUCCUCc -3'
miRNA:   3'- -UGGacuAGCUGGAGuAGGCGcGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 37884 0.66 0.794242
Target:  5'- cGCCgggGAggCGACCgUCGaggcccUCUGCGCCCg- -3'
miRNA:   3'- -UGGa--CUa-GCUGG-AGU------AGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 37976 0.67 0.728455
Target:  5'- cGCCUGcGUCcuGGCCUgCcgCgGCGUCCUCg -3'
miRNA:   3'- -UGGAC-UAG--CUGGA-GuaGgCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 38237 0.68 0.678833
Target:  5'- cGCCUG---GACCUacgCCGCGgCCCUCu -3'
miRNA:   3'- -UGGACuagCUGGAguaGGCGC-GGGAG- -5'
29632 5' -58.3 NC_006151.1 + 38405 0.66 0.803135
Target:  5'- cGCCcccucCGGCCUCcccggcUCCGgGCCCUCc -3'
miRNA:   3'- -UGGacua-GCUGGAGu-----AGGCgCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 38821 0.67 0.747794
Target:  5'- cGCCcGAcggCGGCUUCcgCCGCGUCC-Cg -3'
miRNA:   3'- -UGGaCUa--GCUGGAGuaGGCGCGGGaG- -5'
29632 5' -58.3 NC_006151.1 + 39145 0.67 0.751616
Target:  5'- gGCCUGGgacccgcgccgcggCGGCCUC-UCgGCGCUgCUCg -3'
miRNA:   3'- -UGGACUa-------------GCUGGAGuAGgCGCGG-GAG- -5'
29632 5' -58.3 NC_006151.1 + 42406 0.66 0.776033
Target:  5'- gACC-GGUCGucuuCCUCcUCgCGCGCCgUCu -3'
miRNA:   3'- -UGGaCUAGCu---GGAGuAG-GCGCGGgAG- -5'
29632 5' -58.3 NC_006151.1 + 48966 0.7 0.577756
Target:  5'- cGCCUGGaCGcGCCUCA-CgGCGCCCg- -3'
miRNA:   3'- -UGGACUaGC-UGGAGUaGgCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 49645 0.68 0.698855
Target:  5'- gGCCguggaggaGGUCGAgcCCUCcgggCCGCGCCCg- -3'
miRNA:   3'- -UGGa-------CUAGCU--GGAGua--GGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 50343 0.7 0.547853
Target:  5'- cGCCUGGccgCGGCCUCccgCCGCGUCUcCg -3'
miRNA:   3'- -UGGACUa--GCUGGAGua-GGCGCGGGaG- -5'
29632 5' -58.3 NC_006151.1 + 57244 0.69 0.628264
Target:  5'- ---cGcgCGGCCUCggcGUCCGCgcgGCCCUCg -3'
miRNA:   3'- uggaCuaGCUGGAG---UAGGCG---CGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 57600 0.67 0.766734
Target:  5'- gACCaGGcCGGCCUCggCCGCGgCCg- -3'
miRNA:   3'- -UGGaCUaGCUGGAGuaGGCGCgGGag -5'
29632 5' -58.3 NC_006151.1 + 58051 0.75 0.314164
Target:  5'- aGCCcaGcgCGcaguaguaguCCUCGUCCGCGCCCUCg -3'
miRNA:   3'- -UGGa-CuaGCu---------GGAGUAGGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 58504 0.69 0.648538
Target:  5'- uGCCcgcgcgcgGGcCGGCCUCGUCCuCGUCCUCc -3'
miRNA:   3'- -UGGa-------CUaGCUGGAGUAGGcGCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.