miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 5' -58.3 NC_006151.1 + 141840 0.66 0.820458
Target:  5'- cCCgcgcUCGACgcgaggggCUCGcgCCGCGCCCUCu -3'
miRNA:   3'- uGGacu-AGCUG--------GAGUa-GGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 139134 0.68 0.692869
Target:  5'- cGCCccgugCGcCCUCGUcuucccgcuguacgcCCGCGCCCUCg -3'
miRNA:   3'- -UGGacua-GCuGGAGUA---------------GGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 137634 0.74 0.359136
Target:  5'- cGCCUc--CGcCCUCGUCCGCGCCCcCg -3'
miRNA:   3'- -UGGAcuaGCuGGAGUAGGCGCGGGaG- -5'
29632 5' -58.3 NC_006151.1 + 135272 0.71 0.508791
Target:  5'- gGCCUGcUCGACgaggUCGUCCGUGUCCg- -3'
miRNA:   3'- -UGGACuAGCUGg---AGUAGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 132651 0.67 0.766734
Target:  5'- gACCUGGgccgCcACCUCGUCCGCggagGCCgaCa -3'
miRNA:   3'- -UGGACUa---GcUGGAGUAGGCG----CGGgaG- -5'
29632 5' -58.3 NC_006151.1 + 132616 0.66 0.820458
Target:  5'- cCCaGGUCGACgCUCgcguccgccGUCgGCGCCCg- -3'
miRNA:   3'- uGGaCUAGCUG-GAG---------UAGgCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 126168 0.68 0.702836
Target:  5'- gGCCUGGUCGcggccuuccuggccuACCggcaCAUCuCGCGCCUg- -3'
miRNA:   3'- -UGGACUAGC---------------UGGa---GUAG-GCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 124996 0.7 0.577756
Target:  5'- cACCUGggCGACUgcgUCcUCCGCGaggCCUCg -3'
miRNA:   3'- -UGGACuaGCUGG---AGuAGGCGCg--GGAG- -5'
29632 5' -58.3 NC_006151.1 + 123931 0.7 0.587808
Target:  5'- gGCCgccUCGGCCUCG-CCGaCGCCCg- -3'
miRNA:   3'- -UGGacuAGCUGGAGUaGGC-GCGGGag -5'
29632 5' -58.3 NC_006151.1 + 122792 0.67 0.738169
Target:  5'- -gCUGcgCGGCCUCGcCCGacgaGCgCCUCg -3'
miRNA:   3'- ugGACuaGCUGGAGUaGGCg---CG-GGAG- -5'
29632 5' -58.3 NC_006151.1 + 117948 0.72 0.443532
Target:  5'- gACCgaGAcUCGACCccgUCcgCCGCGCCUUCu -3'
miRNA:   3'- -UGGa-CU-AGCUGG---AGuaGGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 114230 0.68 0.702836
Target:  5'- uCCUGGccUCGGuggccgcgcgggaccCCUCGgagCGCGCCCUCg -3'
miRNA:   3'- uGGACU--AGCU---------------GGAGUag-GCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 112414 0.66 0.803135
Target:  5'- cGCCgcgcgcaGAUCGACCg---CCGCGCCg-- -3'
miRNA:   3'- -UGGa------CUAGCUGGaguaGGCGCGGgag -5'
29632 5' -58.3 NC_006151.1 + 109946 0.74 0.359136
Target:  5'- cCCUGggCGGCCUCggCCGCGUCUg- -3'
miRNA:   3'- uGGACuaGCUGGAGuaGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 109870 0.71 0.53799
Target:  5'- gACCUGA-CGGCgCUCGUCCcuccCGCCCa- -3'
miRNA:   3'- -UGGACUaGCUG-GAGUAGGc---GCGGGag -5'
29632 5' -58.3 NC_006151.1 + 105466 0.67 0.728455
Target:  5'- cCCUGggCGACUUCuUCCGCgacgccgguGCCgUCg -3'
miRNA:   3'- uGGACuaGCUGGAGuAGGCG---------CGGgAG- -5'
29632 5' -58.3 NC_006151.1 + 103244 0.68 0.678833
Target:  5'- gACCUGcugCGGCa-CAUCCGCGCCa-- -3'
miRNA:   3'- -UGGACua-GCUGgaGUAGGCGCGGgag -5'
29632 5' -58.3 NC_006151.1 + 102359 0.69 0.618127
Target:  5'- gGCCggcGA-CGACg-CGUCCGCGCCCg- -3'
miRNA:   3'- -UGGa--CUaGCUGgaGUAGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 100630 0.69 0.618127
Target:  5'- gACCUGGUCagcGCCgcgCugcgCCGCGCCgUCg -3'
miRNA:   3'- -UGGACUAGc--UGGa--Gua--GGCGCGGgAG- -5'
29632 5' -58.3 NC_006151.1 + 99791 0.66 0.785205
Target:  5'- cACCUcGAggcauggcCGACC-CGUCCuucGCGCCCUUc -3'
miRNA:   3'- -UGGA-CUa-------GCUGGaGUAGG---CGCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.