Results 1 - 20 of 301 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29634 | 5' | -59.5 | NC_006151.1 | + | 73786 | 0.85 | 0.071205 |
Target: 5'- gGGCGGCGGCGCgcACCUCGGCGCCc- -3' miRNA: 3'- -CCGCUGCUGCGgaUGGAGCCGUGGca -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 122928 | 0.8 | 0.145485 |
Target: 5'- cGGCGACGACGCggacGCCgacggCGGCGCCGc -3' miRNA: 3'- -CCGCUGCUGCGga--UGGa----GCCGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 118888 | 0.8 | 0.149151 |
Target: 5'- cGGCGGCGAcgcggcCGCCggcgGCCUCGaGCGCCGc -3' miRNA: 3'- -CCGCUGCU------GCGGa---UGGAGC-CGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 121957 | 0.79 | 0.177242 |
Target: 5'- cGGCGACGACGCCgagGCCUacuuugaGcGCACCa- -3' miRNA: 3'- -CCGCUGCUGCGGa--UGGAg------C-CGUGGca -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 87612 | 0.79 | 0.172959 |
Target: 5'- cGGcCGcCGugGCCUGCCagcgCGGCGCCGa -3' miRNA: 3'- -CC-GCuGCugCGGAUGGa---GCCGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 128022 | 0.78 | 0.204968 |
Target: 5'- cGGCGACGGCGUCUgcgacGCCcgCGGCAgCGg -3' miRNA: 3'- -CCGCUGCUGCGGA-----UGGa-GCCGUgGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 137486 | 0.78 | 0.18162 |
Target: 5'- gGGaCGACGACGCCgcccucgccgACUUUGGCGCCGc -3' miRNA: 3'- -CC-GCUGCUGCGGa---------UGGAGCCGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 40434 | 0.78 | 0.200099 |
Target: 5'- cGGCccGGCGGCGCUUGCCUCcccGGCGCCu- -3' miRNA: 3'- -CCG--CUGCUGCGGAUGGAG---CCGUGGca -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 97996 | 0.78 | 0.204968 |
Target: 5'- gGGCGGCGugGCCgcguaggCGGCGCCGg -3' miRNA: 3'- -CCGCUGCugCGGaugga--GCCGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 56363 | 0.78 | 0.190663 |
Target: 5'- cGGCGcggaagcuACGGCGCCUGCUgcacgUCGGCGCCa- -3' miRNA: 3'- -CCGC--------UGCUGCGGAUGG-----AGCCGUGGca -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 65788 | 0.78 | 0.186093 |
Target: 5'- cGGCGAUGGCGCC-GCC-CGGCGCgGa -3' miRNA: 3'- -CCGCUGCUGCGGaUGGaGCCGUGgCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 57236 | 0.77 | 0.220193 |
Target: 5'- aGGCGGCGcGCGCg-GCCUCGGCGuCCGc -3' miRNA: 3'- -CCGCUGC-UGCGgaUGGAGCCGU-GGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 123035 | 0.77 | 0.220193 |
Target: 5'- uGGCGugGGCGgaCCUGCCggccgCGGCGCUGc -3' miRNA: 3'- -CCGCugCUGC--GGAUGGa----GCCGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 86527 | 0.77 | 0.225478 |
Target: 5'- uGGUGuACGACGCCUcgcccgagGCCgccgUGGCGCCGUu -3' miRNA: 3'- -CCGC-UGCUGCGGA--------UGGa---GCCGUGGCA- -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 133156 | 0.76 | 0.241982 |
Target: 5'- cGGCGGCGGCGCgggcguggGCCUCGGcCACgCGUc -3' miRNA: 3'- -CCGCUGCUGCGga------UGGAGCC-GUG-GCA- -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 78132 | 0.76 | 0.259481 |
Target: 5'- cGGCGggccGCgGGCGCCUcggacgacGCCUCGGCcGCCGUg -3' miRNA: 3'- -CCGC----UG-CUGCGGA--------UGGAGCCG-UGGCA- -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 64217 | 0.75 | 0.297554 |
Target: 5'- cGGCGugGGCGCCUcggcguacaggGCCgcgacggCGGCGCgGg -3' miRNA: 3'- -CCGCugCUGCGGA-----------UGGa------GCCGUGgCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 6146 | 0.75 | 0.311174 |
Target: 5'- cGGCcgcgagGACGGCgGCCUcgGCCUCGGCGgCGUc -3' miRNA: 3'- -CCG------CUGCUG-CGGA--UGGAGCCGUgGCA- -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 69432 | 0.75 | 0.309791 |
Target: 5'- aGGCGGCGcCGCCgccguucgcguCCUCGcGCGCCGc -3' miRNA: 3'- -CCGCUGCuGCGGau---------GGAGC-CGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 95292 | 0.75 | 0.297554 |
Target: 5'- cGGCGGCGACGCgCgcgGCC-CGGCGCa-- -3' miRNA: 3'- -CCGCUGCUGCG-Ga--UGGaGCCGUGgca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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