miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 84531 0.66 0.389986
Target:  5'- -cGCCCCCGu--UCCCCGuGGGCu-- -3'
miRNA:   3'- uaCGGGGGCuccGGGGGCuCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 65767 0.66 0.389986
Target:  5'- -cGUCCCCGucGCCgCCGGcGGCGGc -3'
miRNA:   3'- uaCGGGGGCucCGGgGGCUcCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 20297 0.66 0.389986
Target:  5'- -gGgCCCCGGGcGCCCgCCGuggcguuggcGGcGGCGAGc -3'
miRNA:   3'- uaCgGGGGCUC-CGGG-GGC----------UC-CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 114691 0.66 0.389986
Target:  5'- cGUGCUCgaaGGGcgcGUCCCCGGGGGCGGu -3'
miRNA:   3'- -UACGGGgg-CUC---CGGGGGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 88790 0.66 0.385289
Target:  5'- -cGCCCUcgacgacgacgggcgCGAGcGCgUCCGGuGGGCGAGg -3'
miRNA:   3'- uaCGGGG---------------GCUC-CGgGGGCU-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 24275 0.66 0.382179
Target:  5'- -cGCUCCgGAGGCgCgUGucGGGCGGGa -3'
miRNA:   3'- uaCGGGGgCUCCGgGgGCu-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 28250 0.66 0.382179
Target:  5'- -gGCCCauuggCCGGGGCCucacacgugggcCCCGGGGacGCGGGc -3'
miRNA:   3'- uaCGGG-----GGCUCCGG------------GGGCUCC--CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 50023 0.66 0.374476
Target:  5'- -gGCCCgCGcGGcGCCCCCGGGcGCGGc -3'
miRNA:   3'- uaCGGGgGC-UC-CGGGGGCUCcCGCUc -5'
29635 3' -67.6 NC_006151.1 + 51215 0.66 0.374476
Target:  5'- -gGCCgCCCGcGGGCCCgCGcAGGcggcGCGAGc -3'
miRNA:   3'- uaCGG-GGGC-UCCGGGgGC-UCC----CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 59128 0.66 0.374476
Target:  5'- -aGCUgCCGGuggguGGCgCCCGcGGGCGGGu -3'
miRNA:   3'- uaCGGgGGCU-----CCGgGGGCuCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 64529 0.66 0.374476
Target:  5'- -gGCCgCCGcGGCCgCgUCGGGGGCGGc -3'
miRNA:   3'- uaCGGgGGCuCCGG-G-GGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 64842 0.66 0.374476
Target:  5'- gAUGUCCCCGgcgaGGGCCUCggcgGAGGGCc-- -3'
miRNA:   3'- -UACGGGGGC----UCCGGGGg---CUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 100074 0.66 0.374476
Target:  5'- -gGCCgCCGAGGUgCUCGAGGcGCcGGc -3'
miRNA:   3'- uaCGGgGGCUCCGgGGGCUCC-CGcUC- -5'
29635 3' -67.6 NC_006151.1 + 105245 0.66 0.374476
Target:  5'- -gGCCgCCGAGGUCgCCu-GGGaCGAGg -3'
miRNA:   3'- uaCGGgGGCUCCGGgGGcuCCC-GCUC- -5'
29635 3' -67.6 NC_006151.1 + 84790 0.66 0.374476
Target:  5'- -cGCCgCCGAggaGGCgCCCGA-GGCGAc -3'
miRNA:   3'- uaCGGgGGCU---CCGgGGGCUcCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 27337 0.66 0.373711
Target:  5'- cUGCuCCCCGggaccggggucguGGGCCggggCCCGGgcgggucgacGGGCGAGa -3'
miRNA:   3'- uACG-GGGGC-------------UCCGG----GGGCU----------CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 142722 0.66 0.372186
Target:  5'- --uCCCCCG-GGCCCCCacaacucucuggccGGGGGCc-- -3'
miRNA:   3'- uacGGGGGCuCCGGGGG--------------CUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 46628 0.66 0.369905
Target:  5'- gGUGCCUgCGAcgcGGCCggacgggcggacaggCCC-AGGGCGAGa -3'
miRNA:   3'- -UACGGGgGCU---CCGG---------------GGGcUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 38121 0.66 0.366879
Target:  5'- --aUCCCCGGGGCCggcccggCCGAGcGGCGGc -3'
miRNA:   3'- uacGGGGGCUCCGGg------GGCUC-CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 108656 0.66 0.366879
Target:  5'- -cGCCCgCgGAGGUCCCCccucagcagccgGAGcGGCGGc -3'
miRNA:   3'- uaCGGG-GgCUCCGGGGG------------CUC-CCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.