miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 34971 0.73 0.128725
Target:  5'- uUGCaCCgUGAGGCCCCauuggcCGAGGGCGGc -3'
miRNA:   3'- uACG-GGgGCUCCGGGG------GCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 133460 0.73 0.135127
Target:  5'- -gGCCCCgguCGAGGCCCgCGAGGcggccGCGGGc -3'
miRNA:   3'- uaCGGGG---GCUCCGGGgGCUCC-----CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 39095 0.73 0.12171
Target:  5'- cUGCCCCaCGAGgagcucugcgccgaGCCCgCCGAGGGCGc- -3'
miRNA:   3'- uACGGGG-GCUC--------------CGGG-GGCUCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 24189 0.72 0.148816
Target:  5'- -aGCCCCCGucucGGGCagCCCGA-GGCGAGc -3'
miRNA:   3'- uaCGGGGGC----UCCGg-GGGCUcCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 133685 0.72 0.14528
Target:  5'- -cGCCCCCGAGGCggUCUCGucGGCGGc -3'
miRNA:   3'- uaCGGGGGCUCCG--GGGGCucCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 44098 0.72 0.150252
Target:  5'- --aCCCCCGAGcGCccauccccaucaaccCCCCGGGGGCGGc -3'
miRNA:   3'- uacGGGGGCUC-CG---------------GGGGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 38579 0.72 0.138437
Target:  5'- -cGCgCCCGGGGCCcgccgcCCCGGGgacGGCGAGg -3'
miRNA:   3'- uaCGgGGGCUCCGG------GGGCUC---CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 130911 0.72 0.15243
Target:  5'- -cGCCgUCGucgguggccGGGCCCgCGGGGGCGGGg -3'
miRNA:   3'- uaCGGgGGC---------UCCGGGgGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 31225 0.72 0.141479
Target:  5'- -gGCCCCCGGccGGCCggCCCGGcgagcgagcgggcGGGCGAGc -3'
miRNA:   3'- uaCGGGGGCU--CCGG--GGGCU-------------CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 22200 0.71 0.188695
Target:  5'- -cGUCCgCGGGGCCgaCGaAGGGCGAGg -3'
miRNA:   3'- uaCGGGgGCUCCGGggGC-UCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 10 0.71 0.188253
Target:  5'- -cGCuCCCCGGGGgCCgCGAaaaaaggGGGCGGGg -3'
miRNA:   3'- uaCG-GGGGCUCCgGGgGCU-------CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 33869 0.71 0.188695
Target:  5'- uUGaCCCCCcccaucccGGaccCCCCCGGGGGCGGGg -3'
miRNA:   3'- uAC-GGGGGcu------CC---GGGGGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 125217 0.71 0.163756
Target:  5'- -gGCCCCCGcGGCCgCCCGucGGGCc-- -3'
miRNA:   3'- uaCGGGGGCuCCGG-GGGCu-CCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 45578 0.71 0.184318
Target:  5'- -cGUCCCgGGacGGCCCgaGGGGGCGGGg -3'
miRNA:   3'- uaCGGGGgCU--CCGGGggCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 18557 0.71 0.188695
Target:  5'- -cGgCCgCGAGGCCgCCCGGcGGCGGGa -3'
miRNA:   3'- uaCgGGgGCUCCGG-GGGCUcCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 41129 0.71 0.171315
Target:  5'- gAUGgUCCCGAGGgUCCCGGuggucccGGGCGGGa -3'
miRNA:   3'- -UACgGGGGCUCCgGGGGCU-------CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 111395 0.7 0.202378
Target:  5'- -cGCCgCCGGcaCCCCCGccGGGGCGGGa -3'
miRNA:   3'- uaCGGgGGCUccGGGGGC--UCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 127722 0.7 0.202378
Target:  5'- -aGgCCCCGGcGUCCCCGucgcGGGCGGGa -3'
miRNA:   3'- uaCgGGGGCUcCGGGGGCu---CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 89226 0.7 0.207127
Target:  5'- uUGCCgCCGccGCCCCCGuuGGGCGu- -3'
miRNA:   3'- uACGGgGGCucCGGGGGCu-CCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 134976 0.7 0.207127
Target:  5'- -aGCCUCCG-GGCCUUCucGGGCGGGc -3'
miRNA:   3'- uaCGGGGGCuCCGGGGGcuCCCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.