Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29635 | 3' | -67.6 | NC_006151.1 | + | 133460 | 0.73 | 0.135127 |
Target: 5'- -gGCCCCgguCGAGGCCCgCGAGGcggccGCGGGc -3' miRNA: 3'- uaCGGGG---GCUCCGGGgGCUCC-----CGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 18748 | 0.73 | 0.122605 |
Target: 5'- -cGCCgCCGGGGCCCCaCGGGGuGCccGGGg -3' miRNA: 3'- uaCGGgGGCUCCGGGG-GCUCC-CG--CUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 133291 | 0.73 | 0.116756 |
Target: 5'- -gGCCCacguCGAGGUucuCCCCGGGGGCGGc -3' miRNA: 3'- uaCGGGg---GCUCCG---GGGGCUCCCGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 44098 | 0.72 | 0.150252 |
Target: 5'- --aCCCCCGAGcGCccauccccaucaaccCCCCGGGGGCGGc -3' miRNA: 3'- uacGGGGGCUC-CG---------------GGGGCUCCCGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 31225 | 0.72 | 0.141479 |
Target: 5'- -gGCCCCCGGccGGCCggCCCGGcgagcgagcgggcGGGCGAGc -3' miRNA: 3'- uaCGGGGGCU--CCGG--GGGCU-------------CCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 133685 | 0.72 | 0.14528 |
Target: 5'- -cGCCCCCGAGGCggUCUCGucGGCGGc -3' miRNA: 3'- uaCGGGGGCUCCG--GGGGCucCCGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 130911 | 0.72 | 0.15243 |
Target: 5'- -cGCCgUCGucgguggccGGGCCCgCGGGGGCGGGg -3' miRNA: 3'- uaCGGgGGC---------UCCGGGgGCUCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 38579 | 0.72 | 0.138437 |
Target: 5'- -cGCgCCCGGGGCCcgccgcCCCGGGgacGGCGAGg -3' miRNA: 3'- uaCGgGGGCUCCGG------GGGCUC---CCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 24189 | 0.72 | 0.148816 |
Target: 5'- -aGCCCCCGucucGGGCagCCCGA-GGCGAGc -3' miRNA: 3'- uaCGGGGGC----UCCGg-GGGCUcCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 41129 | 0.71 | 0.171315 |
Target: 5'- gAUGgUCCCGAGGgUCCCGGuggucccGGGCGGGa -3' miRNA: 3'- -UACgGGGGCUCCgGGGGCU-------CCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 45578 | 0.71 | 0.184318 |
Target: 5'- -cGUCCCgGGacGGCCCgaGGGGGCGGGg -3' miRNA: 3'- uaCGGGGgCU--CCGGGggCUCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 10 | 0.71 | 0.188253 |
Target: 5'- -cGCuCCCCGGGGgCCgCGAaaaaaggGGGCGGGg -3' miRNA: 3'- uaCG-GGGGCUCCgGGgGCU-------CCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 22200 | 0.71 | 0.188695 |
Target: 5'- -cGUCCgCGGGGCCgaCGaAGGGCGAGg -3' miRNA: 3'- uaCGGGgGCUCCGGggGC-UCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 125217 | 0.71 | 0.163756 |
Target: 5'- -gGCCCCCGcGGCCgCCCGucGGGCc-- -3' miRNA: 3'- uaCGGGGGCuCCGG-GGGCu-CCCGcuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 18557 | 0.71 | 0.188695 |
Target: 5'- -cGgCCgCGAGGCCgCCCGGcGGCGGGa -3' miRNA: 3'- uaCgGGgGCUCCGG-GGGCUcCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 33869 | 0.71 | 0.188695 |
Target: 5'- uUGaCCCCCcccaucccGGaccCCCCCGGGGGCGGGg -3' miRNA: 3'- uAC-GGGGGcu------CC---GGGGGCUCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 82405 | 0.7 | 0.211972 |
Target: 5'- -cGCgCCCGAgggcGGCCCCgaGAGGcGCGGGc -3' miRNA: 3'- uaCGgGGGCU----CCGGGGg-CUCC-CGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 134976 | 0.7 | 0.207127 |
Target: 5'- -aGCCUCCG-GGCCUUCucGGGCGGGc -3' miRNA: 3'- uaCGGGGGCuCCGGGGGcuCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 89226 | 0.7 | 0.207127 |
Target: 5'- uUGCCgCCGccGCCCCCGuuGGGCGu- -3' miRNA: 3'- uACGGgGGCucCGGGGGCu-CCCGCuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 111395 | 0.7 | 0.202378 |
Target: 5'- -cGCCgCCGGcaCCCCCGccGGGGCGGGa -3' miRNA: 3'- uaCGGgGGCUccGGGGGC--UCCCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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