miRNA display CGI


Results 41 - 60 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 27197 0.66 0.725371
Target:  5'- gGGCcgCGCaGAa-GgCGCCGGGGCCc -3'
miRNA:   3'- -CCGuaGUGgCUgaCgGCGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 37689 0.66 0.725371
Target:  5'- cGGCAgcgugacccCGCCG-CUGCCGCacaucggGGAcGCCa -3'
miRNA:   3'- -CCGUa--------GUGGCuGACGGCGg------CCU-CGGc -5'
29637 3' -60.8 NC_006151.1 + 109599 0.66 0.725371
Target:  5'- cGCucuUCACCccGCcGCCGUCGGAcccGCCGg -3'
miRNA:   3'- cCGu--AGUGGc-UGaCGGCGGCCU---CGGC- -5'
29637 3' -60.8 NC_006151.1 + 133315 0.66 0.725371
Target:  5'- gGGCggC-CCGugUcgagGCgCGCCGGgcGGCCGg -3'
miRNA:   3'- -CCGuaGuGGCugA----CG-GCGGCC--UCGGC- -5'
29637 3' -60.8 NC_006151.1 + 137415 0.66 0.725371
Target:  5'- gGGCGcccUCGCCG-CcGCCGCgGGGuCCGc -3'
miRNA:   3'- -CCGU---AGUGGCuGaCGGCGgCCUcGGC- -5'
29637 3' -60.8 NC_006151.1 + 84615 0.66 0.706161
Target:  5'- cGCGcCGCCGcGCgGCCGCCGcGGcGCUGg -3'
miRNA:   3'- cCGUaGUGGC-UGaCGGCGGC-CU-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 24741 0.66 0.706161
Target:  5'- cGGCAggACCaGGCacGUCGCCGG-GCCc -3'
miRNA:   3'- -CCGUagUGG-CUGa-CGGCGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 135918 0.66 0.696464
Target:  5'- cGGCGgucgugCGCgCGcuCUGCCGCgGgGAGCCc -3'
miRNA:   3'- -CCGUa-----GUG-GCu-GACGGCGgC-CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 16956 0.66 0.705193
Target:  5'- uGCAgggccucguccacUCGCCGGCgUGgCGCCaGGAGCgGu -3'
miRNA:   3'- cCGU-------------AGUGGCUG-ACgGCGG-CCUCGgC- -5'
29637 3' -60.8 NC_006151.1 + 69566 0.66 0.706161
Target:  5'- uGGCugcgCACCGGgUGCCgcGCCGcgacGAGCuCGg -3'
miRNA:   3'- -CCGua--GUGGCUgACGG--CGGC----CUCG-GC- -5'
29637 3' -60.8 NC_006151.1 + 4108 0.66 0.706161
Target:  5'- gGGCGacagagucCGCgGcCUGCCGCCGcucGGCCGg -3'
miRNA:   3'- -CCGUa-------GUGgCuGACGGCGGCc--UCGGC- -5'
29637 3' -60.8 NC_006151.1 + 32242 0.66 0.706161
Target:  5'- uGGCcgCGgCGACcGCCGCCGccGCUc -3'
miRNA:   3'- -CCGuaGUgGCUGaCGGCGGCcuCGGc -5'
29637 3' -60.8 NC_006151.1 + 35461 0.66 0.706161
Target:  5'- cGCGaaaucccauUgGCCGGCgGCCGCCaucuuGGGCCGg -3'
miRNA:   3'- cCGU---------AgUGGCUGaCGGCGGc----CUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 75104 0.66 0.706161
Target:  5'- cGGCGUUGCCGGgcGCCagcagcugGUCGGcGGCCGg -3'
miRNA:   3'- -CCGUAGUGGCUgaCGG--------CGGCC-UCGGC- -5'
29637 3' -60.8 NC_006151.1 + 87322 0.66 0.706161
Target:  5'- cGCcgUGCCGGCgcucccggGCCuGCCGG-GCCu -3'
miRNA:   3'- cCGuaGUGGCUGa-------CGG-CGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 102976 0.66 0.706161
Target:  5'- cGGCGcgCuGCUGGCgcaGCUGCUGGAGgCGg -3'
miRNA:   3'- -CCGUa-G-UGGCUGa--CGGCGGCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 106670 0.66 0.706161
Target:  5'- cGCGagGCCGcgGCgcucgGCgCGCCGGGcGCCGg -3'
miRNA:   3'- cCGUagUGGC--UGa----CG-GCGGCCU-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 134467 0.66 0.706161
Target:  5'- uGCAccgCACgGACgGCCGCCacuGGGCCu -3'
miRNA:   3'- cCGUa--GUGgCUGaCGGCGGc--CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 5116 0.66 0.706161
Target:  5'- uGGCGgcccggCGCgGGCgaguggGgCGCCGG-GCCGg -3'
miRNA:   3'- -CCGUa-----GUGgCUGa-----CgGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 13173 0.66 0.706161
Target:  5'- gGGacgGUCGCCG-CgGCCGUcuCGGGGCCc -3'
miRNA:   3'- -CCg--UAGUGGCuGaCGGCG--GCCUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.