miRNA display CGI


Results 41 - 60 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 39827 0.72 0.388144
Target:  5'- cGGCccgucuucGUCuCCuGCgGCCGCCGGGGCCu -3'
miRNA:   3'- -CCG--------UAGuGGcUGaCGGCGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 59438 0.71 0.404515
Target:  5'- cGGCGUCgGCCG-CcGCCGCCGcGAccgcgGCCGa -3'
miRNA:   3'- -CCGUAG-UGGCuGaCGGCGGC-CU-----CGGC- -5'
29637 3' -60.8 NC_006151.1 + 85159 0.71 0.404515
Target:  5'- cGGCAggggGCCGGC-GCCGCgGGcGCCGc -3'
miRNA:   3'- -CCGUag--UGGCUGaCGGCGgCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 37229 0.71 0.412862
Target:  5'- cGGCcUCcCCGGCcccgGCC-CCGGAGCCc -3'
miRNA:   3'- -CCGuAGuGGCUGa---CGGcGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 56180 0.71 0.412862
Target:  5'- uGCucUCGCUGGCcgUGCCGCCGGuggcgcuGCCGc -3'
miRNA:   3'- cCGu-AGUGGCUG--ACGGCGGCCu------CGGC- -5'
29637 3' -60.8 NC_006151.1 + 87471 0.71 0.412862
Target:  5'- cGGCuccagCAgCGGCaGCCGCCGcGGCCGc -3'
miRNA:   3'- -CCGua---GUgGCUGaCGGCGGCcUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 79701 0.71 0.412862
Target:  5'- cGCA--GCCGAaacGCCGCCGGAccGCCGu -3'
miRNA:   3'- cCGUagUGGCUga-CGGCGGCCU--CGGC- -5'
29637 3' -60.8 NC_006151.1 + 55442 0.71 0.412862
Target:  5'- cGGaCGggACCGGC-GCCGCCGGccccGCCGg -3'
miRNA:   3'- -CC-GUagUGGCUGaCGGCGGCCu---CGGC- -5'
29637 3' -60.8 NC_006151.1 + 21474 0.71 0.420464
Target:  5'- cGCGUCGCCGGCUcgggcagGCgGCCGGGGg-- -3'
miRNA:   3'- cCGUAGUGGCUGA-------CGgCGGCCUCggc -5'
29637 3' -60.8 NC_006151.1 + 38289 0.71 0.421314
Target:  5'- cGGC-UCGCCGAg-GCCGCCGcGcGGCCc -3'
miRNA:   3'- -CCGuAGUGGCUgaCGGCGGC-C-UCGGc -5'
29637 3' -60.8 NC_006151.1 + 132844 0.71 0.421314
Target:  5'- cGGCcacCACgGGCgGCCGgcCCGGGGCCGc -3'
miRNA:   3'- -CCGua-GUGgCUGaCGGC--GGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 141771 0.71 0.421314
Target:  5'- uGGCGUCGCCGGuuCUGUC-CCGGGGaCGc -3'
miRNA:   3'- -CCGUAGUGGCU--GACGGcGGCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 127551 0.71 0.421314
Target:  5'- gGGCGUCGUCGucgugGCcGCCGCCGGcGCCu -3'
miRNA:   3'- -CCGUAGUGGC-----UGaCGGCGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 104398 0.71 0.421314
Target:  5'- cGCAUCGCCGGCgGCgUGCUGGcccgcGCCGc -3'
miRNA:   3'- cCGUAGUGGCUGaCG-GCGGCCu----CGGC- -5'
29637 3' -60.8 NC_006151.1 + 105231 0.71 0.421314
Target:  5'- cGGCAgcgGCUGACgGCCGCCGaGGUCGc -3'
miRNA:   3'- -CCGUag-UGGCUGaCGGCGGCcUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 64512 0.71 0.421314
Target:  5'- gGGCGcgCGCCGcCaaagGCCGCCGcGGCCGc -3'
miRNA:   3'- -CCGUa-GUGGCuGa---CGGCGGCcUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 35232 0.71 0.42987
Target:  5'- gGGCga-GCCGAgaugGCCGCCgcgGGGGCCGg -3'
miRNA:   3'- -CCGuagUGGCUga--CGGCGG---CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 76862 0.71 0.42987
Target:  5'- aGGCca-GCCGcGCcGCCGCCaGGAGCCc -3'
miRNA:   3'- -CCGuagUGGC-UGaCGGCGG-CCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 103913 0.71 0.42987
Target:  5'- uGGCG-CGCgCGGCcGCCGUggaGGAGCCGc -3'
miRNA:   3'- -CCGUaGUG-GCUGaCGGCGg--CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 28236 0.71 0.42987
Target:  5'- gGGCcggGCCGACggGCCcauugGCCGGGGCCu -3'
miRNA:   3'- -CCGuagUGGCUGa-CGG-----CGGCCUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.