miRNA display CGI


Results 21 - 40 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 101766 0.74 0.267384
Target:  5'- cGCGcCGCCGACgcgggGCC-CCGGGGCCa -3'
miRNA:   3'- cCGUaGUGGCUGa----CGGcGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 36082 0.74 0.267384
Target:  5'- cGGCcUCuucuCCGACgacGCCGCCGaGGCCGa -3'
miRNA:   3'- -CCGuAGu---GGCUGa--CGGCGGCcUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 81593 0.74 0.273565
Target:  5'- cGCGUCGCCGGg-GCCGCCGGcGCg- -3'
miRNA:   3'- cCGUAGUGGCUgaCGGCGGCCuCGgc -5'
29637 3' -60.8 NC_006151.1 + 21566 0.74 0.27986
Target:  5'- cGGCGagccCGCCGAggGCCGCgCGGGGUCGa -3'
miRNA:   3'- -CCGUa---GUGGCUgaCGGCG-GCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 118883 0.74 0.27986
Target:  5'- cGGCGcggCGgCGACgcgGCCGCCGGcGGCCu -3'
miRNA:   3'- -CCGUa--GUgGCUGa--CGGCGGCC-UCGGc -5'
29637 3' -60.8 NC_006151.1 + 122165 0.74 0.27986
Target:  5'- cGCAcgaUCGgCGGCgggcucguggUGCCGCCGGAGCUGu -3'
miRNA:   3'- cCGU---AGUgGCUG----------ACGGCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 92194 0.74 0.28627
Target:  5'- gGGC--CGCCGACgcGCCGCCGcGGCCGc -3'
miRNA:   3'- -CCGuaGUGGCUGa-CGGCGGCcUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 107543 0.74 0.299435
Target:  5'- cGGCGgcccCGCCGGCgccGCCGCCcgccaagcccgcGGAGCUGa -3'
miRNA:   3'- -CCGUa---GUGGCUGa--CGGCGG------------CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 136834 0.74 0.299435
Target:  5'- gGGC-UCugCGACgcgGCCGCCGGccucgcgcGCCGc -3'
miRNA:   3'- -CCGuAGugGCUGa--CGGCGGCCu-------CGGC- -5'
29637 3' -60.8 NC_006151.1 + 1813 0.73 0.306191
Target:  5'- aGGCAggCGCCGgggaggcaaGC-GCCGCCGG-GCCGa -3'
miRNA:   3'- -CCGUa-GUGGC---------UGaCGGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 127844 0.73 0.313064
Target:  5'- cGGCGUCG-CGGCUG-CGCCGGAgggggcGCCGc -3'
miRNA:   3'- -CCGUAGUgGCUGACgGCGGCCU------CGGC- -5'
29637 3' -60.8 NC_006151.1 + 87592 0.73 0.320053
Target:  5'- cGGCAcCAUCGACgccagcucgGCCGCCGuGGCCu -3'
miRNA:   3'- -CCGUaGUGGCUGa--------CGGCGGCcUCGGc -5'
29637 3' -60.8 NC_006151.1 + 133381 0.73 0.327158
Target:  5'- uGGCG--GCCGggGCgGCgGCCGGGGCCGa -3'
miRNA:   3'- -CCGUagUGGC--UGaCGgCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 6176 0.73 0.341716
Target:  5'- cGGCGUCGUCGGagaagagGCCGCCcGGGCCGa -3'
miRNA:   3'- -CCGUAGUGGCUga-----CGGCGGcCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 54692 0.73 0.341716
Target:  5'- cGCGUCGCCGGCaGCgUGCUGG-GCCa -3'
miRNA:   3'- cCGUAGUGGCUGaCG-GCGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 85197 0.72 0.349169
Target:  5'- gGGCAUCGCgGAC--CUGCUGGAGCgGg -3'
miRNA:   3'- -CCGUAGUGgCUGacGGCGGCCUCGgC- -5'
29637 3' -60.8 NC_006151.1 + 6085 0.72 0.349169
Target:  5'- cGGCGggGCUGcuGCUGCUGCUGG-GCCGa -3'
miRNA:   3'- -CCGUagUGGC--UGACGGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 15136 0.72 0.363646
Target:  5'- cGGCAUCGCCGuCUcgGCCGCCGacgugacGGGCg- -3'
miRNA:   3'- -CCGUAGUGGCuGA--CGGCGGC-------CUCGgc -5'
29637 3' -60.8 NC_006151.1 + 109493 0.72 0.37774
Target:  5'- cGGCucauguucacaccucCGCCG-CUGCCGCCGcAGCCGu -3'
miRNA:   3'- -CCGua-------------GUGGCuGACGGCGGCcUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 39827 0.72 0.388144
Target:  5'- cGGCccgucuucGUCuCCuGCgGCCGCCGGGGCCu -3'
miRNA:   3'- -CCG--------UAGuGGcUGaCGGCGGCCUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.