miRNA display CGI


Results 21 - 40 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 134467 0.66 0.706161
Target:  5'- uGCAccgCACgGACgGCCGCCacuGGGCCu -3'
miRNA:   3'- cCGUa--GUGgCUGaCGGCGGc--CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 98186 0.66 0.706161
Target:  5'- uGCAcgcUCAUCGuCgcGCCGCgCGGGGUCGa -3'
miRNA:   3'- cCGU---AGUGGCuGa-CGGCG-GCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 87252 0.66 0.706161
Target:  5'- gGGCGcuguaccCGCCGAUguacGCCccccaGCCGGGGCUGc -3'
miRNA:   3'- -CCGUa------GUGGCUGa---CGG-----CGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 84615 0.66 0.706161
Target:  5'- cGCGcCGCCGcGCgGCCGCCGcGGcGCUGg -3'
miRNA:   3'- cCGUaGUGGC-UGaCGGCGGC-CU-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 24741 0.66 0.706161
Target:  5'- cGGCAggACCaGGCacGUCGCCGG-GCCc -3'
miRNA:   3'- -CCGUagUGG-CUGa-CGGCGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 13173 0.66 0.706161
Target:  5'- gGGacgGUCGCCG-CgGCCGUcuCGGGGCCc -3'
miRNA:   3'- -CCg--UAGUGGCuGaCGGCG--GCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 5116 0.66 0.706161
Target:  5'- uGGCGgcccggCGCgGGCgaguggGgCGCCGG-GCCGg -3'
miRNA:   3'- -CCGUa-----GUGgCUGa-----CgGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 16956 0.66 0.705193
Target:  5'- uGCAgggccucguccacUCGCCGGCgUGgCGCCaGGAGCgGu -3'
miRNA:   3'- cCGU-------------AGUGGCUG-ACgGCGG-CCUCGgC- -5'
29637 3' -60.8 NC_006151.1 + 81881 0.66 0.696464
Target:  5'- cGCAggagCGCCGGCgccgagGCgCGCCGGucgcggcgcGCCGc -3'
miRNA:   3'- cCGUa---GUGGCUGa-----CG-GCGGCCu--------CGGC- -5'
29637 3' -60.8 NC_006151.1 + 47284 0.66 0.696464
Target:  5'- aGCGUC-CgCGGCUGCUGUgaugggugggCGGAGCgCGg -3'
miRNA:   3'- cCGUAGuG-GCUGACGGCG----------GCCUCG-GC- -5'
29637 3' -60.8 NC_006151.1 + 104353 0.66 0.696464
Target:  5'- gGGUcgCucuUCGGC-GCCGacaCGGAGCCGc -3'
miRNA:   3'- -CCGuaGu--GGCUGaCGGCg--GCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 135918 0.66 0.696464
Target:  5'- cGGCGgucgugCGCgCGcuCUGCCGCgGgGAGCCc -3'
miRNA:   3'- -CCGUa-----GUG-GCu-GACGGCGgC-CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 104986 0.66 0.695491
Target:  5'- cGGCcUCGCucaacauCGACcggGCCGCCuccgcggaGGAGCUGg -3'
miRNA:   3'- -CCGuAGUG-------GCUGa--CGGCGG--------CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 58756 0.66 0.686717
Target:  5'- cGGC--CACCG-CgGCCGCC-GAGCCc -3'
miRNA:   3'- -CCGuaGUGGCuGaCGGCGGcCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 37918 0.66 0.686717
Target:  5'- cGCGUCccGCCGcCUucGCCGCCGcGcAGCCc -3'
miRNA:   3'- cCGUAG--UGGCuGA--CGGCGGC-C-UCGGc -5'
29637 3' -60.8 NC_006151.1 + 39902 0.66 0.686717
Target:  5'- cGCGccuUCugCGcCgcggGCUGCUGGAGCCc -3'
miRNA:   3'- cCGU---AGugGCuGa---CGGCGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 20137 0.66 0.676928
Target:  5'- gGGCGggCGCCGcgggggcggcGCgugGaCCGCCGG-GCCGc -3'
miRNA:   3'- -CCGUa-GUGGC----------UGa--C-GGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 125190 0.66 0.676928
Target:  5'- cGGCcUCGCCGGCgucguggGCC-CCGcGGCCc -3'
miRNA:   3'- -CCGuAGUGGCUGa------CGGcGGCcUCGGc -5'
29637 3' -60.8 NC_006151.1 + 104821 0.66 0.676928
Target:  5'- cGGCggCGCgCGACggccucGCCGCggCGGAGgCGg -3'
miRNA:   3'- -CCGuaGUG-GCUGa-----CGGCG--GCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 49918 0.66 0.676928
Target:  5'- gGGCGcCGgCGGCUGacggacacgauCCGCCGGgaccuGGCCGc -3'
miRNA:   3'- -CCGUaGUgGCUGAC-----------GGCGGCC-----UCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.