miRNA display CGI


Results 21 - 40 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 6176 0.73 0.341716
Target:  5'- cGGCGUCGUCGGagaagagGCCGCCcGGGCCGa -3'
miRNA:   3'- -CCGUAGUGGCUga-----CGGCGGcCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 6233 0.76 0.211661
Target:  5'- cGCggCGCCGggagcccugGCUGCCGCCgucGGGGCCGg -3'
miRNA:   3'- cCGuaGUGGC---------UGACGGCGG---CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 6290 0.78 0.154405
Target:  5'- cGGCcgCGgCGGCgGCCGCCaGGAGCUGg -3'
miRNA:   3'- -CCGuaGUgGCUGaCGGCGG-CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 6505 0.77 0.170344
Target:  5'- gGGCGUCcgucgaggGCUGAUaGCCGCCGGAgaGCCGg -3'
miRNA:   3'- -CCGUAG--------UGGCUGaCGGCGGCCU--CGGC- -5'
29637 3' -60.8 NC_006151.1 + 11011 0.68 0.598018
Target:  5'- cGGC-UCGCCcgcccGCUcGCuCGCCGG-GCCGg -3'
miRNA:   3'- -CCGuAGUGGc----UGA-CG-GCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 13173 0.66 0.706161
Target:  5'- gGGacgGUCGCCG-CgGCCGUcuCGGGGCCc -3'
miRNA:   3'- -CCg--UAGUGGCuGaCGGCG--GCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 15136 0.72 0.363646
Target:  5'- cGGCAUCGCCGuCUcgGCCGCCGacgugacGGGCg- -3'
miRNA:   3'- -CCGUAGUGGCuGA--CGGCGGC-------CUCGgc -5'
29637 3' -60.8 NC_006151.1 + 16956 0.66 0.705193
Target:  5'- uGCAgggccucguccacUCGCCGGCgUGgCGCCaGGAGCgGu -3'
miRNA:   3'- cCGU-------------AGUGGCUG-ACgGCGG-CCUCGgC- -5'
29637 3' -60.8 NC_006151.1 + 17061 0.68 0.5589
Target:  5'- cGGCGUCcgucaGCCcgGGCcGCCGCCGG-GUCa -3'
miRNA:   3'- -CCGUAG-----UGG--CUGaCGGCGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 17708 0.68 0.607872
Target:  5'- aGGCu--GCUGugUGCgcccgggugCGCCGGGGCCc -3'
miRNA:   3'- -CCGuagUGGCugACG---------GCGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 17950 0.69 0.520535
Target:  5'- cGGCGUCuCCGGCgcccGCCuGCCGGcGUCc -3'
miRNA:   3'- -CCGUAGuGGCUGa---CGG-CGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 18737 0.75 0.243785
Target:  5'- cGCGUCGUCG-CcGCCGCCGGGGCCc -3'
miRNA:   3'- cCGUAGUGGCuGaCGGCGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 19477 0.71 0.438528
Target:  5'- cGGCAgguagUCGCCGA-UGCCccgcuCCGGGGCCu -3'
miRNA:   3'- -CCGU-----AGUGGCUgACGGc----GGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 20137 0.66 0.676928
Target:  5'- gGGCGggCGCCGcgggggcggcGCgugGaCCGCCGG-GCCGc -3'
miRNA:   3'- -CCGUa-GUGGC----------UGa--C-GGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 21474 0.71 0.420464
Target:  5'- cGCGUCGCCGGCUcgggcagGCgGCCGGGGg-- -3'
miRNA:   3'- cCGUAGUGGCUGA-------CGgCGGCCUCggc -5'
29637 3' -60.8 NC_006151.1 + 21509 0.79 0.133025
Target:  5'- gGGCGUCACCGgggcgggcucggGCUuCgGCCGGGGCCGg -3'
miRNA:   3'- -CCGUAGUGGC------------UGAcGgCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 21566 0.74 0.27986
Target:  5'- cGGCGagccCGCCGAggGCCGCgCGGGGUCGa -3'
miRNA:   3'- -CCGUa---GUGGCUgaCGGCG-GCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 23905 0.75 0.261316
Target:  5'- gGGCGUCGgucgcgggcCCGACggGCCGCCGGucGUCGu -3'
miRNA:   3'- -CCGUAGU---------GGCUGa-CGGCGGCCu-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 24741 0.66 0.706161
Target:  5'- cGGCAggACCaGGCacGUCGCCGG-GCCc -3'
miRNA:   3'- -CCGUagUGG-CUGa-CGGCGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 27197 0.66 0.725371
Target:  5'- gGGCcgCGCaGAa-GgCGCCGGGGCCc -3'
miRNA:   3'- -CCGuaGUGgCUgaCgGCGGCCUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.