miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 637 0.68 0.578388
Target:  5'- cGGaCGUgaCGCCGGCUuccggggcGCgGCCGGGGCgGg -3'
miRNA:   3'- -CC-GUA--GUGGCUGA--------CGgCGGCCUCGgC- -5'
29637 3' -60.8 NC_006151.1 + 1813 0.73 0.306191
Target:  5'- aGGCAggCGCCGgggaggcaaGC-GCCGCCGG-GCCGa -3'
miRNA:   3'- -CCGUa-GUGGC---------UGaCGGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 2115 0.68 0.568623
Target:  5'- cGCGggGCCGGCcgucGCCGCCgcGGAcGCCGa -3'
miRNA:   3'- cCGUagUGGCUGa---CGGCGG--CCU-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 2373 0.67 0.627623
Target:  5'- aGGCGcgcaacUCgGCCGGCagGCCcUCGGGGCCGc -3'
miRNA:   3'- -CCGU------AG-UGGCUGa-CGGcGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 3092 0.68 0.578388
Target:  5'- cGGCGagcagCGCCGAgagGCCGCCGcGGCgCGg -3'
miRNA:   3'- -CCGUa----GUGGCUga-CGGCGGCcUCG-GC- -5'
29637 3' -60.8 NC_006151.1 + 3471 0.74 0.267384
Target:  5'- gGGCAUgGgcCCGAgCgGgCGCCGGAGCCGg -3'
miRNA:   3'- -CCGUAgU--GGCU-GaCgGCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 3746 0.7 0.447284
Target:  5'- cGGCGggggaGCUGGCguaGCCGgaGGAGCCGg -3'
miRNA:   3'- -CCGUag---UGGCUGa--CGGCggCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 3869 0.71 0.438528
Target:  5'- aGGgGgCGCCcGCcGCCGCCGGcGCCGg -3'
miRNA:   3'- -CCgUaGUGGcUGaCGGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 4108 0.66 0.706161
Target:  5'- gGGCGacagagucCGCgGcCUGCCGCCGcucGGCCGg -3'
miRNA:   3'- -CCGUa-------GUGgCuGACGGCGGCc--UCGGC- -5'
29637 3' -60.8 NC_006151.1 + 4204 0.69 0.549225
Target:  5'- aGGCGggcCCGAggGCgGCCGGGGCgCGg -3'
miRNA:   3'- -CCGUaguGGCUgaCGgCGGCCUCG-GC- -5'
29637 3' -60.8 NC_006151.1 + 4864 0.68 0.5589
Target:  5'- cGGCGcCGCCGuagcggacGCgGCCGUcggccggaggguCGGAGCCGg -3'
miRNA:   3'- -CCGUaGUGGC--------UGaCGGCG------------GCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 5064 0.69 0.539602
Target:  5'- aGGCGgaggagGCCGAggGCCG-CGGGGCCGc -3'
miRNA:   3'- -CCGUag----UGGCUgaCGGCgGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 5116 0.66 0.706161
Target:  5'- uGGCGgcccggCGCgGGCgaguggGgCGCCGG-GCCGg -3'
miRNA:   3'- -CCGUa-----GUGgCUGa-----CgGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 5294 0.76 0.216751
Target:  5'- aGGUccgaGUCGCUGccGCUGCUGCUGGAGCUGc -3'
miRNA:   3'- -CCG----UAGUGGC--UGACGGCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 5349 0.69 0.539602
Target:  5'- gGGCGcccUCuCCGGCgcggcGCCGgCGGGGCUGu -3'
miRNA:   3'- -CCGU---AGuGGCUGa----CGGCgGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 5616 0.75 0.227243
Target:  5'- cGGCGgagggggCGCCG-CcGCCGCCGGGcGCCGa -3'
miRNA:   3'- -CCGUa------GUGGCuGaCGGCGGCCU-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 5706 0.67 0.661197
Target:  5'- cGGC--CACCG-CUGCuggcugugcugguggCGCCGGGGuCCGa -3'
miRNA:   3'- -CCGuaGUGGCuGACG---------------GCGGCCUC-GGC- -5'
29637 3' -60.8 NC_006151.1 + 5797 0.66 0.676928
Target:  5'- -cCAUCuCCGcgggGCUGCCGa-GGGGCCGg -3'
miRNA:   3'- ccGUAGuGGC----UGACGGCggCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 5899 0.78 0.154405
Target:  5'- uGCcgCugCGAgUGCUGCCGGGGUCGg -3'
miRNA:   3'- cCGuaGugGCUgACGGCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 6085 0.72 0.349169
Target:  5'- cGGCGggGCUGcuGCUGCUGCUGG-GCCGa -3'
miRNA:   3'- -CCGUagUGGC--UGACGGCGGCCuCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.