miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 141857 0.69 0.549225
Target:  5'- gGGCucgCGCCGcgcccuCUGgUGCCGGAggGCCGg -3'
miRNA:   3'- -CCGua-GUGGCu-----GACgGCGGCCU--CGGC- -5'
29637 3' -60.8 NC_006151.1 + 141771 0.71 0.421314
Target:  5'- uGGCGUCGCCGGuuCUGUC-CCGGGGaCGc -3'
miRNA:   3'- -CCGUAGUGGCU--GACGGcGGCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 139911 0.7 0.447284
Target:  5'- cGGCuuccgCGCCGcggGCUcGUCGCCGuGGGCCGc -3'
miRNA:   3'- -CCGua---GUGGC---UGA-CGGCGGC-CUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 139299 0.67 0.637506
Target:  5'- cGGCGUCugCGGCgcgUGCUGCUcGAccgugcucGCCGg -3'
miRNA:   3'- -CCGUAGugGCUG---ACGGCGGcCU--------CGGC- -5'
29637 3' -60.8 NC_006151.1 + 138606 0.68 0.568623
Target:  5'- cGGCGcugcCGCuCGGCgaggacGCCGCCGGGGgCGc -3'
miRNA:   3'- -CCGUa---GUG-GCUGa-----CGGCGGCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 137727 0.68 0.5589
Target:  5'- -cCGUCGCCGuACgcgGUgGCCGGcGCCGa -3'
miRNA:   3'- ccGUAGUGGC-UGa--CGgCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 137415 0.66 0.725371
Target:  5'- gGGCGcccUCGCCG-CcGCCGCgGGGuCCGc -3'
miRNA:   3'- -CCGU---AGUGGCuGaCGGCGgCCUcGGC- -5'
29637 3' -60.8 NC_006151.1 + 137078 0.66 0.715799
Target:  5'- uGGCG-CACCGGCgccagGCCuucgcggugcugGCCGGGGaCGc -3'
miRNA:   3'- -CCGUaGUGGCUGa----CGG------------CGGCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 136934 0.68 0.555024
Target:  5'- aGCAgccgggCGCCGACggcgccguccugcGCCGCCugcuGGAGCUGg -3'
miRNA:   3'- cCGUa-----GUGGCUGa------------CGGCGG----CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 136834 0.74 0.299435
Target:  5'- gGGC-UCugCGACgcgGCCGCCGGccucgcgcGCCGc -3'
miRNA:   3'- -CCGuAGugGCUGa--CGGCGGCCu-------CGGC- -5'
29637 3' -60.8 NC_006151.1 + 136063 0.71 0.438528
Target:  5'- cGGCAaCGCCGAgUaCgCGCCGGAGCg- -3'
miRNA:   3'- -CCGUaGUGGCUgAcG-GCGGCCUCGgc -5'
29637 3' -60.8 NC_006151.1 + 135918 0.66 0.696464
Target:  5'- cGGCGgucgugCGCgCGcuCUGCCGCgGgGAGCCc -3'
miRNA:   3'- -CCGUa-----GUG-GCu-GACGGCGgC-CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 135394 0.72 0.388144
Target:  5'- cGGCGUCcagGCCGuC-GUCGCCGGAGgCCu -3'
miRNA:   3'- -CCGUAG---UGGCuGaCGGCGGCCUC-GGc -5'
29637 3' -60.8 NC_006151.1 + 135169 0.8 0.117328
Target:  5'- cGGCccggacgggCGCCGGCUGCCGCCGccGGGCCa -3'
miRNA:   3'- -CCGua-------GUGGCUGACGGCGGC--CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 134467 0.66 0.706161
Target:  5'- uGCAccgCACgGACgGCCGCCacuGGGCCu -3'
miRNA:   3'- cCGUa--GUGgCUGaCGGCGGc--CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 134109 0.71 0.438528
Target:  5'- gGGCggCugCugGugUGCCGgaguCCGGGGCCGg -3'
miRNA:   3'- -CCGuaGugG--CugACGGC----GGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 133490 0.68 0.607872
Target:  5'- gGGCGUCACCuuGGCggcgcggggGgCGCgggaGGAGCCGu -3'
miRNA:   3'- -CCGUAGUGG--CUGa--------CgGCGg---CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 133381 0.73 0.327158
Target:  5'- uGGCG--GCCGggGCgGCgGCCGGGGCCGa -3'
miRNA:   3'- -CCGUagUGGC--UGaCGgCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 133315 0.66 0.725371
Target:  5'- gGGCggC-CCGugUcgagGCgCGCCGGgcGGCCGg -3'
miRNA:   3'- -CCGuaGuGGCugA----CG-GCGGCC--UCGGC- -5'
29637 3' -60.8 NC_006151.1 + 133252 0.69 0.5111
Target:  5'- uGGCcUCGCaCGGcCUGUCGCUGaaggcGAGCCGg -3'
miRNA:   3'- -CCGuAGUG-GCU-GACGGCGGC-----CUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.