miRNA display CGI


Results 21 - 40 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 132844 0.71 0.421314
Target:  5'- cGGCcacCACgGGCgGCCGgcCCGGGGCCGc -3'
miRNA:   3'- -CCGua-GUGgCUGaCGGC--GGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 132391 0.68 0.588188
Target:  5'- cGGUAguagCGCCcGCgcaccaGCUGCCGGAGCUu -3'
miRNA:   3'- -CCGUa---GUGGcUGa-----CGGCGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 130904 0.67 0.647386
Target:  5'- cGGcCGUCGCCGuCgucgGUgGCCGG-GCCc -3'
miRNA:   3'- -CC-GUAGUGGCuGa---CGgCGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 130617 0.68 0.57741
Target:  5'- aGGCGUCcugguCgCGGCUcacgagcGCCGCCGaGGCCGc -3'
miRNA:   3'- -CCGUAGu----G-GCUGA-------CGGCGGCcUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 130017 0.7 0.456136
Target:  5'- cGGCGcgCGCC-ACgGCCGUCGuGAGCCa -3'
miRNA:   3'- -CCGUa-GUGGcUGaCGGCGGC-CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 129180 0.66 0.710023
Target:  5'- cGCAggGCCGccACgGCCGCCgucagcaccuccccgGGGGCCGc -3'
miRNA:   3'- cCGUagUGGC--UGaCGGCGG---------------CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 128543 0.67 0.657255
Target:  5'- cGGCGggccCGCCGGCgcggUGCCGCCcaaaGAGCg- -3'
miRNA:   3'- -CCGUa---GUGGCUG----ACGGCGGc---CUCGgc -5'
29637 3' -60.8 NC_006151.1 + 128052 0.68 0.598018
Target:  5'- cGGCggCAgCGGCgGCUGCgCGGGGgCGa -3'
miRNA:   3'- -CCGuaGUgGCUGaCGGCG-GCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 127844 0.73 0.313064
Target:  5'- cGGCGUCG-CGGCUG-CGCCGGAgggggcGCCGc -3'
miRNA:   3'- -CCGUAGUgGCUGACgGCGGCCU------CGGC- -5'
29637 3' -60.8 NC_006151.1 + 127551 0.71 0.421314
Target:  5'- gGGCGUCGUCGucgugGCcGCCGCCGGcGCCu -3'
miRNA:   3'- -CCGUAGUGGC-----UGaCGGCGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 125190 0.66 0.676928
Target:  5'- cGGCcUCGCCGGCgucguggGCC-CCGcGGCCc -3'
miRNA:   3'- -CCGuAGUGGCUGa------CGGcGGCcUCGGc -5'
29637 3' -60.8 NC_006151.1 + 122985 0.67 0.631576
Target:  5'- gGGCGUCGgcgacgaagacgggcCCGGCgcgcccccGCCGgCGGAcGCCGu -3'
miRNA:   3'- -CCGUAGU---------------GGCUGa-------CGGCgGCCU-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 122937 0.66 0.676928
Target:  5'- cGCGgaCGCCGACggcggcGCCGCgGGGGgCGc -3'
miRNA:   3'- cCGUa-GUGGCUGa-----CGGCGgCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 122454 0.67 0.647386
Target:  5'- cGGCGUC-CaCGGCgGCgGCgGGcGCCGa -3'
miRNA:   3'- -CCGUAGuG-GCUGaCGgCGgCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 122409 0.69 0.5111
Target:  5'- cGGCGcUCGCCGcCguggacGCCGCCGaGGCCc -3'
miRNA:   3'- -CCGU-AGUGGCuGa-----CGGCGGCcUCGGc -5'
29637 3' -60.8 NC_006151.1 + 122165 0.74 0.27986
Target:  5'- cGCAcgaUCGgCGGCgggcucguggUGCCGCCGGAGCUGu -3'
miRNA:   3'- cCGU---AGUgGCUG----------ACGGCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 121938 0.68 0.5589
Target:  5'- uGGgGgCGCUGGCcGCCGCCGGcgacgacGCCGa -3'
miRNA:   3'- -CCgUaGUGGCUGaCGGCGGCCu------CGGC- -5'
29637 3' -60.8 NC_006151.1 + 121843 0.75 0.243785
Target:  5'- cGCG-CGgCGGCUGCCGCUGGAGgCGc -3'
miRNA:   3'- cCGUaGUgGCUGACGGCGGCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 121434 0.68 0.598018
Target:  5'- gGGCucgCGCCGGCcucgcuggUGCC-CgCGGAGCUGg -3'
miRNA:   3'- -CCGua-GUGGCUG--------ACGGcG-GCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 121293 0.68 0.607872
Target:  5'- cGCGUgGCCGACcgcgacgGgCGCUGGAGCg- -3'
miRNA:   3'- cCGUAgUGGCUGa------CgGCGGCCUCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.