Results 21 - 40 of 229 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29637 | 3' | -60.8 | NC_006151.1 | + | 87322 | 0.66 | 0.706161 |
Target: 5'- cGCcgUGCCGGCgcucccggGCCuGCCGG-GCCu -3' miRNA: 3'- cCGuaGUGGCUGa-------CGG-CGGCCuCGGc -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 102976 | 0.66 | 0.706161 |
Target: 5'- cGGCGcgCuGCUGGCgcaGCUGCUGGAGgCGg -3' miRNA: 3'- -CCGUa-G-UGGCUGa--CGGCGGCCUCgGC- -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 137078 | 0.66 | 0.715799 |
Target: 5'- uGGCG-CACCGGCgccagGCCuucgcggugcugGCCGGGGaCGc -3' miRNA: 3'- -CCGUaGUGGCUGa----CGG------------CGGCCUCgGC- -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 56102 | 0.66 | 0.715799 |
Target: 5'- aGUAcCGCCGccGCUGCCucGCCGGggaGGCCu -3' miRNA: 3'- cCGUaGUGGC--UGACGG--CGGCC---UCGGc -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 76361 | 0.66 | 0.724417 |
Target: 5'- cGCgAUCAUCGGCUGCUGCaccucaaacuggaUGGuGCCc -3' miRNA: 3'- cCG-UAGUGGCUGACGGCG-------------GCCuCGGc -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 59231 | 0.66 | 0.725371 |
Target: 5'- -aCGUCuGCCGGCUGCgGCCGacgcgcacGCCGa -3' miRNA: 3'- ccGUAG-UGGCUGACGgCGGCcu------CGGC- -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 27197 | 0.66 | 0.725371 |
Target: 5'- gGGCcgCGCaGAa-GgCGCCGGGGCCc -3' miRNA: 3'- -CCGuaGUGgCUgaCgGCGGCCUCGGc -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 37689 | 0.66 | 0.725371 |
Target: 5'- cGGCAgcgugacccCGCCG-CUGCCGCacaucggGGAcGCCa -3' miRNA: 3'- -CCGUa--------GUGGCuGACGGCGg------CCU-CGGc -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 109599 | 0.66 | 0.725371 |
Target: 5'- cGCucuUCACCccGCcGCCGUCGGAcccGCCGg -3' miRNA: 3'- cCGu--AGUGGc-UGaCGGCGGCCU---CGGC- -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 133315 | 0.66 | 0.725371 |
Target: 5'- gGGCggC-CCGugUcgagGCgCGCCGGgcGGCCGg -3' miRNA: 3'- -CCGuaGuGGCugA----CG-GCGGCC--UCGGC- -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 86182 | 0.66 | 0.715799 |
Target: 5'- uGGC--CGCCGcGCUGCCcCCGGcgGGCCc -3' miRNA: 3'- -CCGuaGUGGC-UGACGGcGGCC--UCGGc -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 129180 | 0.66 | 0.710023 |
Target: 5'- cGCAggGCCGccACgGCCGCCgucagcaccuccccgGGGGCCGc -3' miRNA: 3'- cCGUagUGGC--UGaCGGCGG---------------CCUCGGC- -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 106670 | 0.66 | 0.706161 |
Target: 5'- cGCGagGCCGcgGCgcucgGCgCGCCGGGcGCCGg -3' miRNA: 3'- cCGUagUGGC--UGa----CG-GCGGCCU-CGGC- -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 134467 | 0.66 | 0.706161 |
Target: 5'- uGCAccgCACgGACgGCCGCCacuGGGCCu -3' miRNA: 3'- cCGUa--GUGgCUGaCGGCGGc--CUCGGc -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 5116 | 0.66 | 0.706161 |
Target: 5'- uGGCGgcccggCGCgGGCgaguggGgCGCCGG-GCCGg -3' miRNA: 3'- -CCGUa-----GUGgCUGa-----CgGCGGCCuCGGC- -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 13173 | 0.66 | 0.706161 |
Target: 5'- gGGacgGUCGCCG-CgGCCGUcuCGGGGCCc -3' miRNA: 3'- -CCg--UAGUGGCuGaCGGCG--GCCUCGGc -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 24741 | 0.66 | 0.706161 |
Target: 5'- cGGCAggACCaGGCacGUCGCCGG-GCCc -3' miRNA: 3'- -CCGUagUGG-CUGa-CGGCGGCCuCGGc -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 84615 | 0.66 | 0.706161 |
Target: 5'- cGCGcCGCCGcGCgGCCGCCGcGGcGCUGg -3' miRNA: 3'- cCGUaGUGGC-UGaCGGCGGC-CU-CGGC- -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 87252 | 0.66 | 0.706161 |
Target: 5'- gGGCGcuguaccCGCCGAUguacGCCccccaGCCGGGGCUGc -3' miRNA: 3'- -CCGUa------GUGGCUGa---CGG-----CGGCCUCGGC- -5' |
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29637 | 3' | -60.8 | NC_006151.1 | + | 98186 | 0.66 | 0.706161 |
Target: 5'- uGCAcgcUCAUCGuCgcGCCGCgCGGGGUCGa -3' miRNA: 3'- cCGU---AGUGGCuGa-CGGCG-GCCUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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