miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 87186 0.83 0.075999
Target:  5'- cGGCGcCGCCGcagcuGCUGCCGcCCGGGGCCGu -3'
miRNA:   3'- -CCGUaGUGGC-----UGACGGC-GGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 135169 0.8 0.117328
Target:  5'- cGGCccggacgggCGCCGGCUGCCGCCGccGGGCCa -3'
miRNA:   3'- -CCGua-------GUGGCUGACGGCGGC--CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 21509 0.79 0.133025
Target:  5'- gGGCGUCACCGgggcgggcucggGCUuCgGCCGGGGCCGg -3'
miRNA:   3'- -CCGUAGUGGC------------UGAcGgCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 68640 0.79 0.136389
Target:  5'- cGCGUCGCCGGCUccacugccacgGCCGgCGGGGCCc -3'
miRNA:   3'- cCGUAGUGGCUGA-----------CGGCgGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 6290 0.78 0.154405
Target:  5'- cGGCcgCGgCGGCgGCCGCCaGGAGCUGg -3'
miRNA:   3'- -CCGuaGUgGCUGaCGGCGG-CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 5899 0.78 0.154405
Target:  5'- uGCcgCugCGAgUGCUGCCGGGGUCGg -3'
miRNA:   3'- cCGuaGugGCUgACGGCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 73192 0.78 0.154405
Target:  5'- cGCA-CACCGACUGCUGCCcGcGGGCCa -3'
miRNA:   3'- cCGUaGUGGCUGACGGCGG-C-CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 6505 0.77 0.170344
Target:  5'- gGGCGUCcgucgaggGCUGAUaGCCGCCGGAgaGCCGg -3'
miRNA:   3'- -CCGUAG--------UGGCUGaCGGCGGCCU--CGGC- -5'
29637 3' -60.8 NC_006151.1 + 60215 0.77 0.183248
Target:  5'- gGGC-UCGCCG-C-GCgCGCCGGAGCCGu -3'
miRNA:   3'- -CCGuAGUGGCuGaCG-GCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 106427 0.76 0.211661
Target:  5'- cGCGUCGCCGACUggaccgaggGCCGCuucucggagaCGGAGCUGu -3'
miRNA:   3'- cCGUAGUGGCUGA---------CGGCG----------GCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 6233 0.76 0.211661
Target:  5'- cGCggCGCCGggagcccugGCUGCCGCCgucGGGGCCGg -3'
miRNA:   3'- cCGuaGUGGC---------UGACGGCGG---CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 5294 0.76 0.216751
Target:  5'- aGGUccgaGUCGCUGccGCUGCUGCUGGAGCUGc -3'
miRNA:   3'- -CCG----UAGUGGC--UGACGGCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 92659 0.76 0.216751
Target:  5'- aGGCGcUCGCC--CUGCUGCCGGcGGCCGg -3'
miRNA:   3'- -CCGU-AGUGGcuGACGGCGGCC-UCGGC- -5'
29637 3' -60.8 NC_006151.1 + 106178 0.76 0.221944
Target:  5'- cGCGUCGCgcACccGCCGCUGGAGCCGg -3'
miRNA:   3'- cCGUAGUGgcUGa-CGGCGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 65719 0.76 0.221944
Target:  5'- gGGCcUCGCgCGGCUGCgCGCggcccaGGAGCCGg -3'
miRNA:   3'- -CCGuAGUG-GCUGACG-GCGg-----CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 5616 0.75 0.227243
Target:  5'- cGGCGgagggggCGCCG-CcGCCGCCGGGcGCCGa -3'
miRNA:   3'- -CCGUa------GUGGCuGaCGGCGGCCU-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 121843 0.75 0.243785
Target:  5'- cGCG-CGgCGGCUGCCGCUGGAGgCGc -3'
miRNA:   3'- cCGUaGUgGCUGACGGCGGCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 18737 0.75 0.243785
Target:  5'- cGCGUCGUCG-CcGCCGCCGGGGCCc -3'
miRNA:   3'- cCGUAGUGGCuGaCGGCGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 23905 0.75 0.261316
Target:  5'- gGGCGUCGgucgcgggcCCGACggGCCGCCGGucGUCGu -3'
miRNA:   3'- -CCGUAGU---------GGCUGa-CGGCGGCCu-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 101766 0.74 0.267384
Target:  5'- cGCGcCGCCGACgcgggGCC-CCGGGGCCa -3'
miRNA:   3'- cCGUaGUGGCUGa----CGGcGGCCUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.