miRNA display CGI


Results 41 - 60 of 229 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 28169 0.7 0.456136
Target:  5'- cGGCGUCguuggggcGgCGAgUGCCGUCGGccgGGCCGc -3'
miRNA:   3'- -CCGUAG--------UgGCUgACGGCGGCC---UCGGC- -5'
29637 3' -60.8 NC_006151.1 + 28236 0.71 0.42987
Target:  5'- gGGCcggGCCGACggGCCcauugGCCGGGGCCu -3'
miRNA:   3'- -CCGuagUGGCUGa-CGG-----CGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 29123 0.67 0.647386
Target:  5'- cGCAUCGCgGGCcgggaaGUCGCgGGAGCgCGc -3'
miRNA:   3'- cCGUAGUGgCUGa-----CGGCGgCCUCG-GC- -5'
29637 3' -60.8 NC_006151.1 + 29592 0.68 0.5589
Target:  5'- cGGCggCugCGGCcgcgGCgGCgGGGGCUGg -3'
miRNA:   3'- -CCGuaGugGCUGa---CGgCGgCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 32242 0.66 0.706161
Target:  5'- uGGCcgCGgCGACcGCCGCCGccGCUc -3'
miRNA:   3'- -CCGuaGUgGCUGaCGGCGGCcuCGGc -5'
29637 3' -60.8 NC_006151.1 + 33194 0.67 0.667104
Target:  5'- gGGgAUgGCCGGCcggcGCCcCCGGAGCaCGc -3'
miRNA:   3'- -CCgUAgUGGCUGa---CGGcGGCCUCG-GC- -5'
29637 3' -60.8 NC_006151.1 + 34006 0.68 0.607872
Target:  5'- gGGCGUC-CCGGCg--CGCCGGcccGGCCc -3'
miRNA:   3'- -CCGUAGuGGCUGacgGCGGCC---UCGGc -5'
29637 3' -60.8 NC_006151.1 + 35232 0.71 0.42987
Target:  5'- gGGCga-GCCGAgaugGCCGCCgcgGGGGCCGg -3'
miRNA:   3'- -CCGuagUGGCUga--CGGCGG---CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 35403 0.7 0.483242
Target:  5'- gGGCAagA-UGGCcGCCGCgGGGGCCGg -3'
miRNA:   3'- -CCGUagUgGCUGaCGGCGgCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 35461 0.66 0.706161
Target:  5'- cGCGaaaucccauUgGCCGGCgGCCGCCaucuuGGGCCGg -3'
miRNA:   3'- cCGU---------AgUGGCUGaCGGCGGc----CUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 35950 0.67 0.657255
Target:  5'- gGGCAacuucagccagcUC-CUGGCggccGCCGCCGcGGCCGa -3'
miRNA:   3'- -CCGU------------AGuGGCUGa---CGGCGGCcUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 36082 0.74 0.267384
Target:  5'- cGGCcUCuucuCCGACgacGCCGCCGaGGCCGa -3'
miRNA:   3'- -CCGuAGu---GGCUGa--CGGCGGCcUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 36114 0.68 0.5589
Target:  5'- aGGC--CGCCGuccucgcgGCcGCgGCCGGAGCCa -3'
miRNA:   3'- -CCGuaGUGGC--------UGaCGgCGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 36587 0.68 0.611818
Target:  5'- cGGCGgggGCCcGCUuccccagccucccccGCCGCCGG-GCCGg -3'
miRNA:   3'- -CCGUag-UGGcUGA---------------CGGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 37156 0.67 0.637506
Target:  5'- gGGCcgcCACCGuCU-CCGCCGGcGCCc -3'
miRNA:   3'- -CCGua-GUGGCuGAcGGCGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 37229 0.71 0.412862
Target:  5'- cGGCcUCcCCGGCcccgGCC-CCGGAGCCc -3'
miRNA:   3'- -CCGuAGuGGCUGa---CGGcGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 37318 0.67 0.641459
Target:  5'- gGGCcccCGCCGACcgacggGCCGCUgcucaccccgcucggGGAGCCc -3'
miRNA:   3'- -CCGua-GUGGCUGa-----CGGCGG---------------CCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 37689 0.66 0.725371
Target:  5'- cGGCAgcgugacccCGCCG-CUGCCGCacaucggGGAcGCCa -3'
miRNA:   3'- -CCGUa--------GUGGCuGACGGCGg------CCU-CGGc -5'
29637 3' -60.8 NC_006151.1 + 37918 0.66 0.686717
Target:  5'- cGCGUCccGCCGcCUucGCCGCCGcGcAGCCc -3'
miRNA:   3'- cCGUAG--UGGCuGA--CGGCGGC-C-UCGGc -5'
29637 3' -60.8 NC_006151.1 + 38289 0.71 0.421314
Target:  5'- cGGC-UCGCCGAg-GCCGCCGcGcGGCCc -3'
miRNA:   3'- -CCGuAGUGGCUgaCGGCGGC-C-UCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.