miRNA display CGI


Results 41 - 60 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 20137 0.66 0.676928
Target:  5'- gGGCGggCGCCGcgggggcggcGCgugGaCCGCCGG-GCCGc -3'
miRNA:   3'- -CCGUa-GUGGC----------UGa--C-GGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 122937 0.66 0.676928
Target:  5'- cGCGgaCGCCGACggcggcGCCGCgGGGGgCGc -3'
miRNA:   3'- cCGUa-GUGGCUGa-----CGGCGgCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 33194 0.67 0.667104
Target:  5'- gGGgAUgGCCGGCcggcGCCcCCGGAGCaCGc -3'
miRNA:   3'- -CCgUAgUGGCUGa---CGGcGGCCUCG-GC- -5'
29637 3' -60.8 NC_006151.1 + 89542 0.67 0.667104
Target:  5'- aGCAgCGCCGAg-GCCGgUGGAGgCCGc -3'
miRNA:   3'- cCGUaGUGGCUgaCGGCgGCCUC-GGC- -5'
29637 3' -60.8 NC_006151.1 + 105696 0.67 0.667104
Target:  5'- gGGCcgaCGCCGGCgcgGCCGCgcgccucgaCGGcGCCGu -3'
miRNA:   3'- -CCGua-GUGGCUGa--CGGCG---------GCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 52361 0.67 0.667104
Target:  5'- cGuCGUcCGCCGGCgcGCCcCCGGGGCCc -3'
miRNA:   3'- cC-GUA-GUGGCUGa-CGGcGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 64616 0.67 0.667104
Target:  5'- cGGCGccgCGCCGcCgGCCGC-GGGGCgCGg -3'
miRNA:   3'- -CCGUa--GUGGCuGaCGGCGgCCUCG-GC- -5'
29637 3' -60.8 NC_006151.1 + 66890 0.67 0.667104
Target:  5'- cGGCcccgCGCCGGaggacGCCGCCGaggaGGGCCa -3'
miRNA:   3'- -CCGua--GUGGCUga---CGGCGGC----CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 5706 0.67 0.661197
Target:  5'- cGGC--CACCG-CUGCuggcugugcugguggCGCCGGGGuCCGa -3'
miRNA:   3'- -CCGuaGUGGCuGACG---------------GCGGCCUC-GGC- -5'
29637 3' -60.8 NC_006151.1 + 102916 0.67 0.657255
Target:  5'- ---cUCGCUGGCgGCCGCCgaGGAGCgGc -3'
miRNA:   3'- ccguAGUGGCUGaCGGCGG--CCUCGgC- -5'
29637 3' -60.8 NC_006151.1 + 35950 0.67 0.657255
Target:  5'- gGGCAacuucagccagcUC-CUGGCggccGCCGCCGcGGCCGa -3'
miRNA:   3'- -CCGU------------AGuGGCUGa---CGGCGGCcUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 86602 0.67 0.657255
Target:  5'- uGGCGcgCGCCGcCgaGUCGCCGGA-CCGc -3'
miRNA:   3'- -CCGUa-GUGGCuGa-CGGCGGCCUcGGC- -5'
29637 3' -60.8 NC_006151.1 + 93657 0.67 0.657255
Target:  5'- cGGCAgguccaGCaggaGGCUGUCGCgCGGGGCgCGc -3'
miRNA:   3'- -CCGUag----UGg---CUGACGGCG-GCCUCG-GC- -5'
29637 3' -60.8 NC_006151.1 + 128543 0.67 0.657255
Target:  5'- cGGCGggccCGCCGGCgcggUGCCGCCcaaaGAGCg- -3'
miRNA:   3'- -CCGUa---GUGGCUG----ACGGCGGc---CUCGgc -5'
29637 3' -60.8 NC_006151.1 + 54431 0.67 0.657255
Target:  5'- cGGCGcuUCGgCGACgaggcGcCCGCCGuGGCCGa -3'
miRNA:   3'- -CCGU--AGUgGCUGa----C-GGCGGCcUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 84338 0.67 0.657255
Target:  5'- cGGCcUCGCCGAgUacGUCGCCGGc-CCGc -3'
miRNA:   3'- -CCGuAGUGGCUgA--CGGCGGCCucGGC- -5'
29637 3' -60.8 NC_006151.1 + 112432 0.67 0.657255
Target:  5'- cGCcgCGCCG-CcGCCGCCGcGcGCCa -3'
miRNA:   3'- cCGuaGUGGCuGaCGGCGGC-CuCGGc -5'
29637 3' -60.8 NC_006151.1 + 119194 0.67 0.647386
Target:  5'- gGGCGcCGCCGAC-GCgCGCaaggaGGGcGCCGg -3'
miRNA:   3'- -CCGUaGUGGCUGaCG-GCGg----CCU-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 71331 0.67 0.647386
Target:  5'- cGGCGgcugCGCCGACgaccUCGCCGuGGCCc -3'
miRNA:   3'- -CCGUa---GUGGCUGac--GGCGGCcUCGGc -5'
29637 3' -60.8 NC_006151.1 + 56942 0.67 0.647386
Target:  5'- gGGCGUCGCCGGC-GCucagCGCCucGAGCgCGc -3'
miRNA:   3'- -CCGUAGUGGCUGaCG----GCGGc-CUCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.