miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 59473 0.7 0.381765
Target:  5'- uCCACcUCCgGCgaggcgCCCUcgaagagccCGGCGGCCUCc -3'
miRNA:   3'- cGGUGuAGG-CGa-----GGGA---------GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 40238 0.7 0.389803
Target:  5'- uGCUGC-UCCGCUgagcggggcgccCCCUCGGCccGGCCg- -3'
miRNA:   3'- -CGGUGuAGGCGA------------GGGAGCCG--CCGGag -5'
29638 3' -62.1 NC_006151.1 + 102506 0.7 0.389803
Target:  5'- cGCCGCGgcgCgGgaCCC-CGGCGGCgUCu -3'
miRNA:   3'- -CGGUGUa--GgCgaGGGaGCCGCCGgAG- -5'
29638 3' -62.1 NC_006151.1 + 81347 0.7 0.39795
Target:  5'- cGCCGCcgCCGCgcccggggCCC-CGGCGGgCg- -3'
miRNA:   3'- -CGGUGuaGGCGa-------GGGaGCCGCCgGag -5'
29638 3' -62.1 NC_006151.1 + 35580 0.7 0.406207
Target:  5'- gGCCAUugGUCCGCUUaCCUgggGGCGGgCUCu -3'
miRNA:   3'- -CGGUG--UAGGCGAG-GGAg--CCGCCgGAG- -5'
29638 3' -62.1 NC_006151.1 + 85443 0.7 0.414569
Target:  5'- cGCCGCggCCGcCUUCCUgGGCcgcGGCCa- -3'
miRNA:   3'- -CGGUGuaGGC-GAGGGAgCCG---CCGGag -5'
29638 3' -62.1 NC_006151.1 + 38806 0.69 0.423037
Target:  5'- uGCCcgaGCAccCCGCgCCCgaCGGCGGCUUCc -3'
miRNA:   3'- -CGG---UGUa-GGCGaGGGa-GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 135473 0.69 0.423037
Target:  5'- cGCCAgcgUGUCCGCgcgggCCaggcggCGcGCGGCCUCg -3'
miRNA:   3'- -CGGU---GUAGGCGa----GGga----GC-CGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 139260 0.69 0.423037
Target:  5'- gGCCACGcccgCgCGCUCCgaCGGCGGacgcgccgcCCUCg -3'
miRNA:   3'- -CGGUGUa---G-GCGAGGgaGCCGCC---------GGAG- -5'
29638 3' -62.1 NC_006151.1 + 114146 0.69 0.42389
Target:  5'- aGCCGCGgcucgggcgcagcgaCCGCgcggCCCUCGuGCuGGCCUa -3'
miRNA:   3'- -CGGUGUa--------------GGCGa---GGGAGC-CG-CCGGAg -5'
29638 3' -62.1 NC_006151.1 + 7269 0.69 0.431608
Target:  5'- cCCACGUggCCGC--CCUCGGCcaauggGGCCUCa -3'
miRNA:   3'- cGGUGUA--GGCGagGGAGCCG------CCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 141680 0.69 0.431608
Target:  5'- aGgCAUGUCUGcCUCCCaCGGCGGCUg- -3'
miRNA:   3'- -CgGUGUAGGC-GAGGGaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 65991 0.69 0.431608
Target:  5'- gGCCGCGagCGCgUCCUCcGCGGCgUCg -3'
miRNA:   3'- -CGGUGUagGCGaGGGAGcCGCCGgAG- -5'
29638 3' -62.1 NC_006151.1 + 58944 0.69 0.44028
Target:  5'- cGCCGCAaagUCCacgGCcCCCUCGGUGcgcggccacGCCUCc -3'
miRNA:   3'- -CGGUGU---AGG---CGaGGGAGCCGC---------CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 86981 0.69 0.44028
Target:  5'- cGCCACcgCCGCUcgCCCUCGcccgagcccCGGCCc- -3'
miRNA:   3'- -CGGUGuaGGCGA--GGGAGCc--------GCCGGag -5'
29638 3' -62.1 NC_006151.1 + 37023 0.69 0.449049
Target:  5'- cGCCGCcgCCGCgcggCgCUCGGCcuCCUCc -3'
miRNA:   3'- -CGGUGuaGGCGa---GgGAGCCGccGGAG- -5'
29638 3' -62.1 NC_006151.1 + 7011 0.69 0.457915
Target:  5'- -gCAUGUCCgGCcCCCgCGGCGGCCa- -3'
miRNA:   3'- cgGUGUAGG-CGaGGGaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 78747 0.69 0.457915
Target:  5'- cCCACGUCCGCcgUCUgcgccgaGGCGGCgCUCc -3'
miRNA:   3'- cGGUGUAGGCGa-GGGag-----CCGCCG-GAG- -5'
29638 3' -62.1 NC_006151.1 + 4022 0.69 0.457915
Target:  5'- gGCCGCGg-CGUaggUCCa--GGCGGCCUCg -3'
miRNA:   3'- -CGGUGUagGCG---AGGgagCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 126074 0.69 0.457915
Target:  5'- uGCCACGggggCCGUgaucucggCCgUCGGCGGCa-- -3'
miRNA:   3'- -CGGUGUa---GGCGa-------GGgAGCCGCCGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.