miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 5' -49.6 NC_006151.1 + 82608 0.66 0.995695
Target:  5'- gGGUGGGCccgcGCgcgGGcGCCGCGGuGGGCg -3'
miRNA:   3'- aCCACUUGa---UGa--CCaUGGCGUU-CUUG- -5'
29639 5' -49.6 NC_006151.1 + 47590 0.66 0.995695
Target:  5'- cGGUaAACUGCaguacgcGGcgGCCGCAGGAAa -3'
miRNA:   3'- aCCAcUUGAUGa------CCa-UGGCGUUCUUg -5'
29639 5' -49.6 NC_006151.1 + 116240 0.67 0.993177
Target:  5'- cGGccgaGAGCU-CgaGGUGCgGCAGGAACu -3'
miRNA:   3'- aCCa---CUUGAuGa-CCAUGgCGUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 103544 0.67 0.993177
Target:  5'- cUGGUGGGC-GCcGGgcaGCCGCucGGGGCg -3'
miRNA:   3'- -ACCACUUGaUGaCCa--UGGCGu-UCUUG- -5'
29639 5' -49.6 NC_006151.1 + 20129 0.67 0.993177
Target:  5'- gGGcUGGGggGCgGGcGCCGCGGGGGCg -3'
miRNA:   3'- aCC-ACUUgaUGaCCaUGGCGUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 106353 0.67 0.992115
Target:  5'- cGGUGGACacGCUGGa--CGCGGGcGCg -3'
miRNA:   3'- aCCACUUGa-UGACCaugGCGUUCuUG- -5'
29639 5' -49.6 NC_006151.1 + 85828 0.67 0.992115
Target:  5'- cGGUGcGC--CUGGUGgCGCuGGAGCu -3'
miRNA:   3'- aCCACuUGauGACCAUgGCGuUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 17115 0.67 0.992115
Target:  5'- cGG-GGGCUccgGCggcGGUGCUGCGGGAGg -3'
miRNA:   3'- aCCaCUUGA---UGa--CCAUGGCGUUCUUg -5'
29639 5' -49.6 NC_006151.1 + 102986 0.67 0.992115
Target:  5'- cUGGcGcAGCUGCUGGagGCgGgCGAGGACg -3'
miRNA:   3'- -ACCaC-UUGAUGACCa-UGgC-GUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 22717 0.67 0.991418
Target:  5'- uUGGUGGuCUcggucucgaccgagaGCUGGagGCCGCcgaGGGAGCg -3'
miRNA:   3'- -ACCACUuGA---------------UGACCa-UGGCG---UUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 95693 0.67 0.990926
Target:  5'- aGGUGcc--GCUGGUAgCGCuggAAGAACa -3'
miRNA:   3'- aCCACuugaUGACCAUgGCG---UUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 6085 0.67 0.990926
Target:  5'- cGGcgGGGCUGCUGcUGCUGCugggccgaagGAGGACg -3'
miRNA:   3'- aCCa-CUUGAUGACcAUGGCG----------UUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 91134 0.67 0.9896
Target:  5'- cGGcGAGCUuggccacCUGGgGgCGCGAGAGCg -3'
miRNA:   3'- aCCaCUUGAu------GACCaUgGCGUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 126389 0.67 0.988127
Target:  5'- cGGgcccGcGCUGCUGGccaGCCGCGucGGGGCg -3'
miRNA:   3'- aCCa---CuUGAUGACCa--UGGCGU--UCUUG- -5'
29639 5' -49.6 NC_006151.1 + 119181 0.67 0.987971
Target:  5'- aGGUGGACgACgcgGGcGCCGCcgacgcgcgcaagGAGGGCg -3'
miRNA:   3'- aCCACUUGaUGa--CCaUGGCG-------------UUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 92479 0.68 0.986498
Target:  5'- gGGUGGACUACUcGGaguuccugGCCGCGuucguGCg -3'
miRNA:   3'- aCCACUUGAUGA-CCa-------UGGCGUucu--UG- -5'
29639 5' -49.6 NC_006151.1 + 21680 0.68 0.986498
Target:  5'- cGG-GGGCUGCUGGUagaACgGCGucaGGAAUc -3'
miRNA:   3'- aCCaCUUGAUGACCA---UGgCGU---UCUUG- -5'
29639 5' -49.6 NC_006151.1 + 92563 0.68 0.984702
Target:  5'- aGGUGGcCgagucGCUGGaggGCCGCGAGGu- -3'
miRNA:   3'- aCCACUuGa----UGACCa--UGGCGUUCUug -5'
29639 5' -49.6 NC_006151.1 + 44369 0.68 0.984702
Target:  5'- gGGgagaGggUUGCgacGGUcccGCCGCGGGGGCg -3'
miRNA:   3'- aCCa---CuuGAUGa--CCA---UGGCGUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 134453 0.68 0.980571
Target:  5'- -cGUGAcGCUACcGGUgcACCGCAcGGACg -3'
miRNA:   3'- acCACU-UGAUGaCCA--UGGCGUuCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.