miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 128122 0.71 0.44552
Target:  5'- aCGCgCGCGaagcgcUCCGugG-GCCCGCCGu -3'
miRNA:   3'- gGCGgGCGUa-----AGGCugUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 85629 0.71 0.44552
Target:  5'- gCCGCCgCGCGgcgCCagcgggGACGcGCCCGCCu -3'
miRNA:   3'- -GGCGG-GCGUaa-GG------CUGUaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 37935 0.71 0.44552
Target:  5'- gCCGCCgCGCAgcCCGGCcgcGUGCCCcgcgaGCUGg -3'
miRNA:   3'- -GGCGG-GCGUaaGGCUG---UACGGG-----CGGC- -5'
29640 3' -60 NC_006151.1 + 4939 0.71 0.44552
Target:  5'- gCgGCCCGUcggUCGGCGgggGCCCGUCGg -3'
miRNA:   3'- -GgCGGGCGuaaGGCUGUa--CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 97861 0.71 0.44552
Target:  5'- gUCGUCCGCGUUCuCGGCGg--CCGCCa -3'
miRNA:   3'- -GGCGGGCGUAAG-GCUGUacgGGCGGc -5'
29640 3' -60 NC_006151.1 + 43197 0.71 0.454359
Target:  5'- aCCGCCUGCAcccggUUCCGGCG---CUGCCGg -3'
miRNA:   3'- -GGCGGGCGU-----AAGGCUGUacgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 68632 0.71 0.454359
Target:  5'- aCUGCCCGCGcgucgCCGGCuccacUGCCacgGCCGg -3'
miRNA:   3'- -GGCGGGCGUaa---GGCUGu----ACGGg--CGGC- -5'
29640 3' -60 NC_006151.1 + 10624 0.71 0.459708
Target:  5'- gCGCCCGCGUgcgcucgugccggCgCGGCAUcCCCGCCc -3'
miRNA:   3'- gGCGGGCGUAa------------G-GCUGUAcGGGCGGc -5'
29640 3' -60 NC_006151.1 + 39542 0.71 0.463293
Target:  5'- uUCGCCCGCGUggaGGCcuccuucGCCCGCCu -3'
miRNA:   3'- -GGCGGGCGUAaggCUGua-----CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 86308 0.71 0.463293
Target:  5'- aCUGCCCGCAg-CUGGgggcCGUGCUCGCCc -3'
miRNA:   3'- -GGCGGGCGUaaGGCU----GUACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 109258 0.71 0.472318
Target:  5'- uCCGCUgGCGgccCCGACGUcGCUgGCCGc -3'
miRNA:   3'- -GGCGGgCGUaa-GGCUGUA-CGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 6747 0.71 0.481431
Target:  5'- cUCGCCCGCuuccucugCCGucugcuuuGCAUGCCCgGCCc -3'
miRNA:   3'- -GGCGGGCGuaa-----GGC--------UGUACGGG-CGGc -5'
29640 3' -60 NC_006151.1 + 135361 0.71 0.481431
Target:  5'- gCCGCCgCGCGUuggCCG-CGUGCgCCGCg- -3'
miRNA:   3'- -GGCGG-GCGUAa--GGCuGUACG-GGCGgc -5'
29640 3' -60 NC_006151.1 + 60680 0.7 0.499906
Target:  5'- gCCG-CCGCcgUCCucccGCGcGCCCGCCGc -3'
miRNA:   3'- -GGCgGGCGuaAGGc---UGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 92043 0.7 0.499906
Target:  5'- aCCGCCCGCug-CCuGCugcGCCUGCUGc -3'
miRNA:   3'- -GGCGGGCGuaaGGcUGua-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 109591 0.7 0.50551
Target:  5'- cCCGCCCGCGcucuucaccccgCCGcCGUcgGaCCCGCCGg -3'
miRNA:   3'- -GGCGGGCGUaa----------GGCuGUA--C-GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 130652 0.7 0.509261
Target:  5'- gCCGCCUGCGgcgugaaCGucaGUGCCCGCgGg -3'
miRNA:   3'- -GGCGGGCGUaag----GCug-UACGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 48942 0.7 0.509261
Target:  5'- gCUGCCCGCGcgCgagGACGUGUUCGCCu -3'
miRNA:   3'- -GGCGGGCGUaaGg--CUGUACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 35854 0.7 0.509261
Target:  5'- gCCGCCCGCucUCCGcGCucggcGCCCgGCCu -3'
miRNA:   3'- -GGCGGGCGuaAGGC-UGua---CGGG-CGGc -5'
29640 3' -60 NC_006151.1 + 11351 0.7 0.509261
Target:  5'- gCCGCCCGCGggcgcuaCCGcGCGcuccGCUCGCCGc -3'
miRNA:   3'- -GGCGGGCGUaa-----GGC-UGUa---CGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.