miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 114914 0.7 0.235229
Target:  5'- gGGCGCacggCCCCGGCGu-CGcGCUCGGc -3'
miRNA:   3'- gCCGCGg---GGGGCCGCcuGC-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 4431 0.7 0.235229
Target:  5'- uCGGCGUaggCCCGGCGGA-GGCUCu-- -3'
miRNA:   3'- -GCCGCGgg-GGGCCGCCUgCCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 63769 0.7 0.235229
Target:  5'- uCGGCGCCCCCgcgucgccaGGCGGGguCGGC-CGu- -3'
miRNA:   3'- -GCCGCGGGGGg--------CCGCCU--GCCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 89720 0.7 0.235229
Target:  5'- gCGGCGCCggccgcggCCgCGGUGGugGGCgagaCGAGc -3'
miRNA:   3'- -GCCGCGG--------GGgGCCGCCugCCGa---GCUU- -5'
29641 5' -67.3 NC_006151.1 + 128210 0.69 0.240602
Target:  5'- uGGCGCCCCa-GGCGugcGACGaGCUCGu- -3'
miRNA:   3'- gCCGCGGGGggCCGC---CUGC-CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 44102 0.69 0.244423
Target:  5'- cCGaGCGCCCauccccaucaacccCCCGG-GGGCGGCcaUCGAAa -3'
miRNA:   3'- -GC-CGCGGG--------------GGGCCgCCUGCCG--AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 50030 0.69 0.246076
Target:  5'- gCGGCGCCCCCgGGC--GCGGC-Ca-- -3'
miRNA:   3'- -GCCGCGGGGGgCCGccUGCCGaGcuu -5'
29641 5' -67.3 NC_006151.1 + 17109 0.69 0.246076
Target:  5'- gGGCGCCgggggCUCCGGCGG-CGGUgcugCGGGa -3'
miRNA:   3'- gCCGCGG-----GGGGCCGCCuGCCGa---GCUU- -5'
29641 5' -67.3 NC_006151.1 + 36507 0.69 0.246076
Target:  5'- uCGGUgaGCCCgggCCGGCGGcGCGGcCUCGGAc -3'
miRNA:   3'- -GCCG--CGGGg--GGCCGCC-UGCC-GAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 102694 0.69 0.251653
Target:  5'- gGGCGCCCggcgCgGGCGGcGCGGC-CGAGc -3'
miRNA:   3'- gCCGCGGGg---GgCCGCC-UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 67986 0.69 0.251653
Target:  5'- gCGGCGgCCCgCCGGCGccgcGGCcacgGGCUCGGc -3'
miRNA:   3'- -GCCGCgGGG-GGCCGC----CUG----CCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 38587 0.69 0.26312
Target:  5'- gGGCccGCCgCCCCGG-GGACGGCgagGAGg -3'
miRNA:   3'- gCCG--CGG-GGGGCCgCCUGCCGag-CUU- -5'
29641 5' -67.3 NC_006151.1 + 67565 0.69 0.26901
Target:  5'- uGGCGCCCgCgGGCGuccagcccgccGAUGaGCUCGGAg -3'
miRNA:   3'- gCCGCGGGgGgCCGC-----------CUGC-CGAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 66772 0.69 0.26901
Target:  5'- aCGGcCGCCCUCgggaCGGCGGcgGCGGCggCGGGg -3'
miRNA:   3'- -GCC-GCGGGGG----GCCGCC--UGCCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 4380 0.69 0.274402
Target:  5'- aCGGuCGCCuCCCCGGCGcGgggguccGCGGCgCGGc -3'
miRNA:   3'- -GCC-GCGG-GGGGCCGC-C-------UGCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 38629 0.69 0.275007
Target:  5'- cCGGCgcgGCCCUCCGcGgGGACGGCcaCGGc -3'
miRNA:   3'- -GCCG---CGGGGGGC-CgCCUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 137650 0.69 0.275007
Target:  5'- -cGCGCCCccguCCCGGCGGACGaGCg---- -3'
miRNA:   3'- gcCGCGGG----GGGCCGCCUGC-CGagcuu -5'
29641 5' -67.3 NC_006151.1 + 37174 0.68 0.28111
Target:  5'- cCGGCGCCCgCC-GCGGccccGCGGCccUCGGc -3'
miRNA:   3'- -GCCGCGGGgGGcCGCC----UGCCG--AGCUu -5'
29641 5' -67.3 NC_006151.1 + 20633 0.68 0.28111
Target:  5'- gGGCGCCCCCUgGGCGGcACcagGGC-CGu- -3'
miRNA:   3'- gCCGCGGGGGG-CCGCC-UG---CCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 109539 0.68 0.28111
Target:  5'- -aGCGCCCCCCGGaggcgccgUGGACguGGCcCGAGc -3'
miRNA:   3'- gcCGCGGGGGGCC--------GCCUG--CCGaGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.