miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 3' -54.9 NC_006151.1 + 19490 0.66 0.946168
Target:  5'- cCGAUGcCcCGCUCCggggCCUCGGGGAcGCa -3'
miRNA:   3'- -GCUGCaGcGUGAGGa---GGGGUUUCU-CG- -5'
29642 3' -54.9 NC_006151.1 + 140146 0.66 0.946168
Target:  5'- aCGugGgucaaGCucaUCCUCaCCAAGGGGCu -3'
miRNA:   3'- -GCugCag---CGug-AGGAGgGGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 88031 0.66 0.946168
Target:  5'- aGGCGUCGUagcGCUgCgugUCCUCGAAGAcggGCa -3'
miRNA:   3'- gCUGCAGCG---UGAgG---AGGGGUUUCU---CG- -5'
29642 3' -54.9 NC_006151.1 + 58324 0.66 0.946168
Target:  5'- gCGGCGgCGCGCcggCCUCCgCGuAGGcGCg -3'
miRNA:   3'- -GCUGCaGCGUGa--GGAGGgGUuUCU-CG- -5'
29642 3' -54.9 NC_006151.1 + 2339 0.66 0.946168
Target:  5'- uCGGCGUCGgGCUCCagcagCgCCGcGGcGCa -3'
miRNA:   3'- -GCUGCAGCgUGAGGa----GgGGUuUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 90607 0.66 0.946168
Target:  5'- aGGCGUgGCcccCUUC-CCCCGAGGcGGCc -3'
miRNA:   3'- gCUGCAgCGu--GAGGaGGGGUUUC-UCG- -5'
29642 3' -54.9 NC_006151.1 + 127843 0.66 0.946168
Target:  5'- gCGGCGUCGCgGCUgCgCCggAGGGGGCg -3'
miRNA:   3'- -GCUGCAGCG-UGAgGaGGggUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 23688 0.66 0.941662
Target:  5'- uCGACGgaggGCAUggCgUCCCCGGGGcAGCc -3'
miRNA:   3'- -GCUGCag--CGUGa-GgAGGGGUUUC-UCG- -5'
29642 3' -54.9 NC_006151.1 + 33275 0.66 0.941662
Target:  5'- gCGGCGgccaUCGCccgACcCUUCCCCGGGGcGCg -3'
miRNA:   3'- -GCUGC----AGCG---UGaGGAGGGGUUUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 3607 0.66 0.941662
Target:  5'- uCGuCGUCGCGgUggccguggCCgUCCCCGcgGAGGGCc -3'
miRNA:   3'- -GCuGCAGCGUgA--------GG-AGGGGU--UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 132079 0.66 0.941662
Target:  5'- uCGACcagGUCgGCGCcgUCCUCCUCGAuGAGg -3'
miRNA:   3'- -GCUG---CAG-CGUG--AGGAGGGGUUuCUCg -5'
29642 3' -54.9 NC_006151.1 + 55151 0.66 0.941198
Target:  5'- aGACGgUGCGCUCgUaCCUCGAcgagaccGGGGCg -3'
miRNA:   3'- gCUGCaGCGUGAGgA-GGGGUU-------UCUCG- -5'
29642 3' -54.9 NC_006151.1 + 112977 0.66 0.936919
Target:  5'- gGACGcgCGCGCgccgCCgagCCUggGGGGCu -3'
miRNA:   3'- gCUGCa-GCGUGa---GGag-GGGuuUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 55451 0.66 0.936919
Target:  5'- cCGGCGcCGCcggCC-CCgCCGGGGGGCg -3'
miRNA:   3'- -GCUGCaGCGugaGGaGG-GGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 130382 0.66 0.936919
Target:  5'- gCGGCGUCcaGCGCgaaggccagcgCCUCgCCCGc-GAGCg -3'
miRNA:   3'- -GCUGCAG--CGUGa----------GGAG-GGGUuuCUCG- -5'
29642 3' -54.9 NC_006151.1 + 30560 0.66 0.936919
Target:  5'- -cGCGcCGCACgcgCCgucccgcggCCCCGucGGGCg -3'
miRNA:   3'- gcUGCaGCGUGa--GGa--------GGGGUuuCUCG- -5'
29642 3' -54.9 NC_006151.1 + 27327 0.66 0.936919
Target:  5'- gGACGggGgGCUgCUCCCCGGgaccGGGGUc -3'
miRNA:   3'- gCUGCagCgUGAgGAGGGGUU----UCUCG- -5'
29642 3' -54.9 NC_006151.1 + 21013 0.66 0.936919
Target:  5'- gCGACGU-GCACgcugacgCCggcgCCCCuGAAGAGg -3'
miRNA:   3'- -GCUGCAgCGUGa------GGa---GGGG-UUUCUCg -5'
29642 3' -54.9 NC_006151.1 + 59248 0.66 0.933958
Target:  5'- cCGACG-CGCACgccgaaggccUCCUCCCaCAucaccuugaacacGAGCg -3'
miRNA:   3'- -GCUGCaGCGUG----------AGGAGGG-GUuu-----------CUCG- -5'
29642 3' -54.9 NC_006151.1 + 42576 0.66 0.931936
Target:  5'- cCGGCGccaCGCGCcgCCcgUCCCCGAGaGGCc -3'
miRNA:   3'- -GCUGCa--GCGUGa-GG--AGGGGUUUcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.