miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 20419 0.66 0.541222
Target:  5'- cGCCCCCUCCuCGuccuccuCCUcuucgucggagcgggGCUCGGGGguggcGCCg -3'
miRNA:   3'- -CGGGGGAGG-GC-------GGG---------------CGGGCUCCa----UGG- -5'
29648 3' -65.2 NC_006151.1 + 107815 0.66 0.539366
Target:  5'- aGCCCCCgccgccggucaucaaCCCGCCCuaCCCGGcgacggccccGGcGCCc -3'
miRNA:   3'- -CGGGGGa--------------GGGCGGGc-GGGCU----------CCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 706 0.66 0.53844
Target:  5'- -gCCCCUUCCG-UCGCaCCGGGGguCCg -3'
miRNA:   3'- cgGGGGAGGGCgGGCG-GGCUCCauGG- -5'
29648 3' -65.2 NC_006151.1 + 4184 0.66 0.53844
Target:  5'- gGCCgucaCCUCCUcgaggcagGCggGCCCGAGGgcgGCCg -3'
miRNA:   3'- -CGGg---GGAGGG--------CGggCGGGCUCCa--UGG- -5'
29648 3' -65.2 NC_006151.1 + 15238 0.66 0.53844
Target:  5'- gGCCCCCUgcuggcaggcCCUGCUccagcucuCGCCCGAGcagagcGCCc -3'
miRNA:   3'- -CGGGGGA----------GGGCGG--------GCGGGCUCca----UGG- -5'
29648 3' -65.2 NC_006151.1 + 32050 0.66 0.53844
Target:  5'- aGCCgCCUCugcagccgCCGCCCGCgCCGcg--ACCg -3'
miRNA:   3'- -CGGgGGAG--------GGCGGGCG-GGCuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 39131 0.66 0.53844
Target:  5'- gGCgCCCCgcgCCCGgccugggaCCCGCgCCGcGGcgGCCu -3'
miRNA:   3'- -CG-GGGGa--GGGC--------GGGCG-GGCuCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 67692 0.66 0.53844
Target:  5'- cGCgCagCUCCCGCuuGUCCGccuGGcGCCa -3'
miRNA:   3'- -CGgGg-GAGGGCGggCGGGCu--CCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 109527 0.66 0.53844
Target:  5'- aGCCgUCUCagcagCGCCC-CCCGgAGGcGCCg -3'
miRNA:   3'- -CGGgGGAGg----GCGGGcGGGC-UCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 18395 0.66 0.53844
Target:  5'- cGgCCCCUCguagCCGCuguccCCGCCgGGGGaggaggGCCg -3'
miRNA:   3'- -CgGGGGAG----GGCG-----GGCGGgCUCCa-----UGG- -5'
29648 3' -65.2 NC_006151.1 + 123931 0.66 0.53844
Target:  5'- gGCCgCCUCggccUCGCCgaCGCCCGggacGGGcGCCa -3'
miRNA:   3'- -CGGgGGAG----GGCGG--GCGGGC----UCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 107519 0.66 0.53844
Target:  5'- cGCCCaCgCUCCCGCCguugGCCCc-GGcgGCCc -3'
miRNA:   3'- -CGGG-G-GAGGGCGGg---CGGGcuCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 18530 0.66 0.535663
Target:  5'- cGUCCCCgCCCGCgucggcacccggaaCgGCCgCGAGGccGCCc -3'
miRNA:   3'- -CGGGGGaGGGCG--------------GgCGG-GCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 121483 0.66 0.535663
Target:  5'- cGCCCCCggaggacgaCCUGuuugacaugggcgcCCCGCCCGAGaagcgGCUg -3'
miRNA:   3'- -CGGGGGa--------GGGC--------------GGGCGGGCUCca---UGG- -5'
29648 3' -65.2 NC_006151.1 + 80611 0.66 0.529202
Target:  5'- cCCCCCUCCCGUCU-CCCGucucuCCc -3'
miRNA:   3'- cGGGGGAGGGCGGGcGGGCuccauGG- -5'
29648 3' -65.2 NC_006151.1 + 34162 0.66 0.529202
Target:  5'- cCCCCCUCCCccucuGCCaCGCCCc----GCCa -3'
miRNA:   3'- cGGGGGAGGG-----CGG-GCGGGcuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 30546 0.66 0.529202
Target:  5'- cCCCCCUCUCGuUCCGCgCCGcacGcGCCg -3'
miRNA:   3'- cGGGGGAGGGC-GGGCG-GGCuc-CaUGG- -5'
29648 3' -65.2 NC_006151.1 + 7790 0.66 0.529202
Target:  5'- aGCCCggaCCCGCCCGgaCCCGgaaggaAGGaGCCg -3'
miRNA:   3'- -CGGGggaGGGCGGGC--GGGC------UCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 26545 0.66 0.529202
Target:  5'- uUCCCCgucCCCGCCguCGUCCGAGcccgaGCCc -3'
miRNA:   3'- cGGGGGa--GGGCGG--GCGGGCUCca---UGG- -5'
29648 3' -65.2 NC_006151.1 + 7619 0.66 0.529202
Target:  5'- --aCCCUCCCGCgaCC-CCCGcGGUcGCCc -3'
miRNA:   3'- cggGGGAGGGCG--GGcGGGCuCCA-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.