miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 123931 0.66 0.53844
Target:  5'- gGCCgCCUCggccUCGCCgaCGCCCGggacGGGcGCCa -3'
miRNA:   3'- -CGGgGGAG----GGCGG--GCGGGC----UCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 121483 0.66 0.535663
Target:  5'- cGCCCCCggaggacgaCCUGuuugacaugggcgcCCCGCCCGAGaagcgGCUg -3'
miRNA:   3'- -CGGGGGa--------GGGC--------------GGGCGGGCUCca---UGG- -5'
29648 3' -65.2 NC_006151.1 + 120877 0.71 0.285976
Target:  5'- uGCUCCgCUCCgucauggccucgCGCCCGCUgGuGGUGCUg -3'
miRNA:   3'- -CGGGG-GAGG------------GCGGGCGGgCuCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 118324 0.72 0.232471
Target:  5'- uGCCCCCgagcagcgCCgCGCCCGCCCucucgcgcgccugcGAGGcgGCg -3'
miRNA:   3'- -CGGGGGa-------GG-GCGGGCGGG--------------CUCCa-UGg -5'
29648 3' -65.2 NC_006151.1 + 117919 0.76 0.126944
Target:  5'- cGCCgCCggaCCCGUCCGCCCggaGAGGggACCg -3'
miRNA:   3'- -CGGgGGa--GGGCGGGCGGG---CUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 117013 0.67 0.432304
Target:  5'- cGCgCUCC-CCCGCggGCCCGGgccgcaggcGGUACCa -3'
miRNA:   3'- -CG-GGGGaGGGCGggCGGGCU---------CCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 114658 0.67 0.466412
Target:  5'- cGCCCCC-CUCGCCCGUgagcgCCGcGaagGCCu -3'
miRNA:   3'- -CGGGGGaGGGCGGGCG-----GGCuCca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 114254 0.67 0.449179
Target:  5'- -aCCCCUCggaGCgCGCCCucgagGAGGUGCUc -3'
miRNA:   3'- cgGGGGAGgg-CGgGCGGG-----CUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 112528 0.66 0.507281
Target:  5'- cGCCCUCUUCCGCgagcugaucuucgCCGCCCacgugaugcuggacGAGGaggACUc -3'
miRNA:   3'- -CGGGGGAGGGCG-------------GGCGGG--------------CUCCa--UGG- -5'
29648 3' -65.2 NC_006151.1 + 109990 0.66 0.519109
Target:  5'- aCCCgCgagCCCGCCgaggaggCGCCCGAGcuggACCc -3'
miRNA:   3'- cGGGgGa--GGGCGG-------GCGGGCUCca--UGG- -5'
29648 3' -65.2 NC_006151.1 + 109674 0.68 0.4077
Target:  5'- cGCCCCCUCagCCGCUauggGCgagCGAGGgagagGCCg -3'
miRNA:   3'- -CGGGGGAG--GGCGGg---CGg--GCUCCa----UGG- -5'
29648 3' -65.2 NC_006151.1 + 109527 0.66 0.53844
Target:  5'- aGCCgUCUCagcagCGCCC-CCCGgAGGcGCCg -3'
miRNA:   3'- -CGGgGGAGg----GCGGGcGGGC-UCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 109117 0.68 0.4077
Target:  5'- aGCCgCCggcCCgCGCCCGCCgGccGGGcACCu -3'
miRNA:   3'- -CGGgGGa--GG-GCGGGCGGgC--UCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 108919 0.7 0.321274
Target:  5'- gGCCCCgCgccagaccgggggucUUCCGCCCGCggcucaacCCGAGG-GCCg -3'
miRNA:   3'- -CGGGG-G---------------AGGGCGGGCG--------GGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 108319 0.71 0.250424
Target:  5'- cGCCCCCcgcgCCCggGCCCGCCCcaucgGCCa -3'
miRNA:   3'- -CGGGGGa---GGG--CGGGCGGGcuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 108223 0.68 0.391793
Target:  5'- gGCCCgCCgcaCCGCCCGCCCcucc-ACCa -3'
miRNA:   3'- -CGGG-GGag-GGCGGGCGGGcuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 108171 0.72 0.218598
Target:  5'- cCCCCCgcCCCGCCCGCCCcccc-ACCa -3'
miRNA:   3'- cGGGGGa-GGGCGGGCGGGcuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 108130 0.71 0.273702
Target:  5'- aGCCCCCgUCgucccaaccggCCGCCaaGCCgCGGGGUGCUn -3'
miRNA:   3'- -CGGGGG-AG-----------GGCGGg-CGG-GCUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 107972 0.68 0.4077
Target:  5'- gGCCCCC-CCUGCCCagaaGCCCccGGcgcaGCCc -3'
miRNA:   3'- -CGGGGGaGGGCGGG----CGGGcuCCa---UGG- -5'
29648 3' -65.2 NC_006151.1 + 107885 0.67 0.449179
Target:  5'- gGCCCCCcaggCCCagccGCCCGCCgCGGccaaGCCg -3'
miRNA:   3'- -CGGGGGa---GGG----CGGGCGG-GCUcca-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.