miRNA display CGI


Results 21 - 40 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 135863 0.66 0.550397
Target:  5'- -aCCGGGCAcGUgGCCa-GCGUCCGCGu -3'
miRNA:   3'- acGGCUCGUaCG-CGGagCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 135800 0.69 0.372
Target:  5'- cUGCCGGGCGagcGCGCCgaggccgagcuuuuaGCGCgCCGCc -3'
miRNA:   3'- -ACGGCUCGUa--CGCGGag-------------CGCG-GGCGc -5'
29649 5' -63.6 NC_006151.1 + 135458 0.68 0.406513
Target:  5'- gGCCuGGUAggugcGCGCCagCGUGUCCGCGc -3'
miRNA:   3'- aCGGcUCGUa----CGCGGa-GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 135363 0.67 0.475764
Target:  5'- cGCCGcGCGUugGCCgCGUGCgCCGCGa -3'
miRNA:   3'- aCGGCuCGUAcgCGGaGCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 135310 0.69 0.393437
Target:  5'- cGCCGAccgagagguacagguGCAUgaGCGCCgccaggcaCGUGUCCGCGa -3'
miRNA:   3'- aCGGCU---------------CGUA--CGCGGa-------GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 135101 0.66 0.550397
Target:  5'- gGCCGGGCggGCGgCgguaGCGCgCGgGg -3'
miRNA:   3'- aCGGCUCGuaCGCgGag--CGCGgGCgC- -5'
29649 5' -63.6 NC_006151.1 + 134752 0.71 0.301752
Target:  5'- -cCCGAGCA-GCGCg-CGCgggGCCCGCGg -3'
miRNA:   3'- acGGCUCGUaCGCGgaGCG---CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 134317 0.7 0.315357
Target:  5'- cGCCGc---UGCGCCUCGCGCCgGgCa -3'
miRNA:   3'- aCGGCucguACGCGGAGCGCGGgC-Gc -5'
29649 5' -63.6 NC_006151.1 + 133403 0.66 0.540839
Target:  5'- gGCCGAGCggGCgGUCUUG-GC-CGCGg -3'
miRNA:   3'- aCGGCUCGuaCG-CGGAGCgCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 133196 0.68 0.418176
Target:  5'- gGCCGcGCAgaagaUGCGCUuguugaaggcgugcgUCGCGCCgCGCc -3'
miRNA:   3'- aCGGCuCGU-----ACGCGG---------------AGCGCGG-GCGc -5'
29649 5' -63.6 NC_006151.1 + 133163 0.77 0.119222
Target:  5'- gGCgCGGGCGUGgGCCUCG-GCCaCGCGu -3'
miRNA:   3'- aCG-GCUCGUACgCGGAGCgCGG-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 132490 0.7 0.343941
Target:  5'- aGgCGcGCGUaGCGCUccucgCGCGCCCGCa -3'
miRNA:   3'- aCgGCuCGUA-CGCGGa----GCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 132414 0.7 0.343941
Target:  5'- cUGCCgGAGCuUGC-CCUcgucgcggCGCGCCUGCGc -3'
miRNA:   3'- -ACGG-CUCGuACGcGGA--------GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 132305 0.66 0.569661
Target:  5'- gGuCCGcguGCAgGCGCCacgagagcUCGCGCgCCGUGg -3'
miRNA:   3'- aC-GGCu--CGUaCGCGG--------AGCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 132118 0.7 0.336623
Target:  5'- cGCaCGAGCG-GCagGCCcagcUCGCGCCgGCGg -3'
miRNA:   3'- aCG-GCUCGUaCG--CGG----AGCGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 131842 0.66 0.550397
Target:  5'- gUGauGAGCGggGCgGCCgagacgCGCGCCgGCGg -3'
miRNA:   3'- -ACggCUCGUa-CG-CGGa-----GCGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 131746 0.67 0.475764
Target:  5'- gGcCCGGGCGagGCGaCCgUCGCGgUCGCGa -3'
miRNA:   3'- aC-GGCUCGUa-CGC-GG-AGCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 131536 0.71 0.27591
Target:  5'- cGCUGcucuuGCGaGCGCCUCGgGCgCCGCa -3'
miRNA:   3'- aCGGCu----CGUaCGCGGAGCgCG-GGCGc -5'
29649 5' -63.6 NC_006151.1 + 130911 0.67 0.484834
Target:  5'- cGCCGucGUcgGUGgC-CGgGCCCGCGg -3'
miRNA:   3'- aCGGCu-CGuaCGCgGaGCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 130651 0.67 0.466778
Target:  5'- gGCCGccugcGGCGUGaaCGUCa-GUGCCCGCGg -3'
miRNA:   3'- aCGGC-----UCGUAC--GCGGagCGCGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.