Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 50372 | 0.66 | 0.809899 |
Target: 5'- gCGGGGAGuCCGGGaugaUACCg--GGACCc -3' miRNA: 3'- -GCUCCUC-GGCCUag--AUGGggaCCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 46762 | 0.66 | 0.801206 |
Target: 5'- uCGAGGAagacccuguguaGCUGGcgCagggugauCUCCUGGACCc -3' miRNA: 3'- -GCUCCU------------CGGCCuaGau------GGGGACCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 124669 | 0.66 | 0.792365 |
Target: 5'- -cGGGAGCCgcgGGGUC-AUCCCcGcGACCg -3' miRNA: 3'- gcUCCUCGG---CCUAGaUGGGGaC-CUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 9114 | 0.66 | 0.792365 |
Target: 5'- -cGGGAGCCgcgGGGUC-AUCCCcGcGACCg -3' miRNA: 3'- gcUCCUCGG---CCUAGaUGGGGaC-CUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 108803 | 0.67 | 0.774275 |
Target: 5'- gGAGGuGCCGGG------CCUGGACCc -3' miRNA: 3'- gCUCCuCGGCCUagauggGGACCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 95387 | 0.67 | 0.774275 |
Target: 5'- cCGGGcGAGCCGuGGaaucguUCaUGCUCCgGGACCc -3' miRNA: 3'- -GCUC-CUCGGC-CU------AG-AUGGGGaCCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 59602 | 0.67 | 0.765042 |
Target: 5'- --cGGAGacCCGGuugCUACCCCgucGACCa -3' miRNA: 3'- gcuCCUC--GGCCua-GAUGGGGac-CUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 103585 | 0.67 | 0.755695 |
Target: 5'- uGGGGGGUCGGAacgcgccggugaUCccACCCgagUGGACCu -3' miRNA: 3'- gCUCCUCGGCCU------------AGa-UGGGg--ACCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 86915 | 0.67 | 0.755695 |
Target: 5'- gGAGGAccaguucacacgGuuGGAgaacacacUCUACUCCaUGGGCCu -3' miRNA: 3'- gCUCCU------------CggCCU--------AGAUGGGG-ACCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 81245 | 0.67 | 0.746244 |
Target: 5'- uCGAGGAGgucgUGGGUCUGCUCgUguaacaGGGCCg -3' miRNA: 3'- -GCUCCUCg---GCCUAGAUGGGgA------CCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 109007 | 0.67 | 0.72706 |
Target: 5'- gCGAGaGAGCUGcucGUCUACCCCaGGuACg -3' miRNA: 3'- -GCUC-CUCGGCc--UAGAUGGGGaCC-UGg -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 113324 | 0.68 | 0.711483 |
Target: 5'- aCGGGGAucguGCCGGGUCUGCgcgucgagucgagugUCCguccGGACUc -3' miRNA: 3'- -GCUCCU----CGGCCUAGAUG---------------GGGa---CCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 33063 | 0.68 | 0.697715 |
Target: 5'- uGAGGAGUgugagauacUGGGUCgucACCCUcaGGGCCa -3' miRNA: 3'- gCUCCUCG---------GCCUAGa--UGGGGa-CCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 45792 | 0.68 | 0.697715 |
Target: 5'- -cGGGAGCUGGAgUCcaugcagACCgCaCUGGACCu -3' miRNA: 3'- gcUCCUCGGCCU-AGa------UGG-G-GACCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 19531 | 0.68 | 0.697715 |
Target: 5'- aCGAGaGAGCUGGccagcacgcUCUACCUCUuGGCCc -3' miRNA: 3'- -GCUC-CUCGGCCu--------AGAUGGGGAcCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 16266 | 0.68 | 0.687816 |
Target: 5'- uCGAGGAGUCucgagcGGUCgaGCCCCgGGACg -3' miRNA: 3'- -GCUCCUCGGc-----CUAGa-UGGGGaCCUGg -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 131820 | 0.68 | 0.687816 |
Target: 5'- uCGAGGAGUCucgagcGGUCgaGCCCCgGGACg -3' miRNA: 3'- -GCUCCUCGGc-----CUAGa-UGGGGaCCUGg -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 2695 | 0.68 | 0.686823 |
Target: 5'- uGAGGGGUgGGAgggccguUCU-CCCaaGGACCu -3' miRNA: 3'- gCUCCUCGgCCU-------AGAuGGGgaCCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 118249 | 0.68 | 0.686823 |
Target: 5'- uGAGGGGUgGGAgggccguUCU-CCCaaGGACCu -3' miRNA: 3'- gCUCCUCGgCCU-------AGAuGGGgaCCUGG- -5' |
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2965 | 3' | -58.5 | NC_001493.1 | + | 73517 | 0.69 | 0.607703 |
Target: 5'- -cGGGAGCCuccuGGAUCUACUCUUcaaGGACg -3' miRNA: 3'- gcUCCUCGG----CCUAGAUGGGGA---CCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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