miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2965 5' -54.5 NC_001493.1 + 3793 0.66 0.950817
Target:  5'- cGCGGCGguuuCGAGGugauguGC-GGGUCcauCCu -3'
miRNA:   3'- -CGCCGCau--GCUCCu-----CGaCCUAGau-GG- -5'
2965 5' -54.5 NC_001493.1 + 23298 0.66 0.950817
Target:  5'- cCGGUGUuaucguUGGGGAGCUGGAg----- -3'
miRNA:   3'- cGCCGCAu-----GCUCCUCGACCUagaugg -5'
2965 5' -54.5 NC_001493.1 + 119347 0.66 0.950817
Target:  5'- cGCGGCGguuuCGAGGugauguGC-GGGUCcauCCu -3'
miRNA:   3'- -CGCCGCau--GCUCCu-----CGaCCUAGau-GG- -5'
2965 5' -54.5 NC_001493.1 + 82940 0.66 0.94203
Target:  5'- cGgGGUGUACGGGGGGCgGcGAagCUAa- -3'
miRNA:   3'- -CgCCGCAUGCUCCUCGaC-CUa-GAUgg -5'
2965 5' -54.5 NC_001493.1 + 69134 0.66 0.94203
Target:  5'- aCGGUGUGCGAcuggguugGGGGUcgGGA-CUACUc -3'
miRNA:   3'- cGCCGCAUGCU--------CCUCGa-CCUaGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 99014 0.66 0.937278
Target:  5'- cCGGUagACGAGGAGCUuGAUC--CCa -3'
miRNA:   3'- cGCCGcaUGCUCCUCGAcCUAGauGG- -5'
2965 5' -54.5 NC_001493.1 + 58507 0.66 0.937278
Target:  5'- uGCGGCuguUGCGGGGGGaucauaUGGGUCg--- -3'
miRNA:   3'- -CGCCGc--AUGCUCCUCg-----ACCUAGaugg -5'
2965 5' -54.5 NC_001493.1 + 54189 0.66 0.930738
Target:  5'- -aGGUGaaGCGAGGGGCcgcgaaccUGGAgcacaugggucugaUCUACCa -3'
miRNA:   3'- cgCCGCa-UGCUCCUCG--------ACCU--------------AGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 89891 0.67 0.915843
Target:  5'- aGCGGUcucuggGUugGAGGAGaagaUGGGcaUCgACCu -3'
miRNA:   3'- -CGCCG------CAugCUCCUCg---ACCU--AGaUGG- -5'
2965 5' -54.5 NC_001493.1 + 54341 0.67 0.909268
Target:  5'- aUGGCGUACGAucugagauguucgGGuuGCUGGAggcuccucUCUAUCc -3'
miRNA:   3'- cGCCGCAUGCU-------------CCu-CGACCU--------AGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 25765 0.67 0.903673
Target:  5'- -aGGUGUGCGAuaaaGGGUUGaacucGGUCUACCg -3'
miRNA:   3'- cgCCGCAUGCUc---CUCGAC-----CUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 28236 0.67 0.89723
Target:  5'- cGCGGaGUACGAGaGAcGaCUGGGUagacgGCCg -3'
miRNA:   3'- -CGCCgCAUGCUC-CU-C-GACCUAga---UGG- -5'
2965 5' -54.5 NC_001493.1 + 119014 0.67 0.89723
Target:  5'- cUGGCGUccCGAGGAGCgccccacGGAUCcuccCCa -3'
miRNA:   3'- cGCCGCAu-GCUCCUCGa------CCUAGau--GG- -5'
2965 5' -54.5 NC_001493.1 + 3460 0.67 0.89723
Target:  5'- cUGGCGUccCGAGGAGCgccccacGGAUCcuccCCa -3'
miRNA:   3'- cGCCGCAu-GCUCCUCGa------CCUAGau--GG- -5'
2965 5' -54.5 NC_001493.1 + 87065 0.68 0.890552
Target:  5'- cCGGauacuauacaCGUACGGGGAGCaGGAUgaACUc -3'
miRNA:   3'- cGCC----------GCAUGCUCCUCGaCCUAgaUGG- -5'
2965 5' -54.5 NC_001493.1 + 51532 0.68 0.890552
Target:  5'- -aGGCG-ACGAGGGGgacCUGGA-CcGCCa -3'
miRNA:   3'- cgCCGCaUGCUCCUC---GACCUaGaUGG- -5'
2965 5' -54.5 NC_001493.1 + 70486 0.68 0.883644
Target:  5'- uCGGUcacGUACGAGGAcGUUuacacGaGAUCUACCa -3'
miRNA:   3'- cGCCG---CAUGCUCCU-CGA-----C-CUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 121310 0.68 0.883644
Target:  5'- aGCGGUGUGgGAGGGGUguccagcaGGcgC-GCCa -3'
miRNA:   3'- -CGCCGCAUgCUCCUCGa-------CCuaGaUGG- -5'
2965 5' -54.5 NC_001493.1 + 5756 0.68 0.883644
Target:  5'- aGCGGUGUGgGAGGGGUguccagcaGGcgC-GCCa -3'
miRNA:   3'- -CGCCGCAUgCUCCUCGa-------CCuaGaUGG- -5'
2965 5' -54.5 NC_001493.1 + 73530 0.69 0.820684
Target:  5'- aCGGCaGUcgggACG-GGAGCcuccUGGAUCUACUc -3'
miRNA:   3'- cGCCG-CA----UGCuCCUCG----ACCUAGAUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.