Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 93843 | 1.06 | 0.002197 |
Target: 5'- aUCGACCGUGAACGGACCCGGGGGUAAa -3' miRNA: 3'- -AGCUGGCACUUGCCUGGGCCCCCAUU- -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 35350 | 0.72 | 0.409759 |
Target: 5'- aUGACCGUGGACGucguCCCGGGGa--- -3' miRNA: 3'- aGCUGGCACUUGCcu--GGGCCCCcauu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 107638 | 0.72 | 0.453723 |
Target: 5'- --uGCCGUGAGuuGAUCCGGGGGUu- -3' miRNA: 3'- agcUGGCACUUgcCUGGGCCCCCAuu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 105870 | 0.7 | 0.519271 |
Target: 5'- aCGACCG-GGuacACGGAgacgagguCCCGGGGGg-- -3' miRNA: 3'- aGCUGGCaCU---UGCCU--------GGGCCCCCauu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 50687 | 0.7 | 0.548507 |
Target: 5'- gCGGCCGUGggUGGACCUuucuuuuuuguGGuGGUGGu -3' miRNA: 3'- aGCUGGCACuuGCCUGGG-----------CCcCCAUU- -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 107210 | 0.7 | 0.528952 |
Target: 5'- gUCGACC-UGAggGCGGcCCCGGuucuGGGUAAa -3' miRNA: 3'- -AGCUGGcACU--UGCCuGGGCC----CCCAUU- -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 20754 | 0.69 | 0.588232 |
Target: 5'- cUGACCGUGAcCGaACCCGGcGGGc-- -3' miRNA: 3'- aGCUGGCACUuGCcUGGGCC-CCCauu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 20680 | 0.68 | 0.648599 |
Target: 5'- gCGGCCcaUGAuCGaGGCCCGGGGGc-- -3' miRNA: 3'- aGCUGGc-ACUuGC-CUGGGCCCCCauu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 8352 | 0.68 | 0.638525 |
Target: 5'- cUCGAUCGcccUGAAgcgcgguuCGGGCCgGGGGGUc- -3' miRNA: 3'- -AGCUGGC---ACUU--------GCCUGGgCCCCCAuu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 123906 | 0.68 | 0.638525 |
Target: 5'- cUCGAUCGcccUGAAgcgcgguuCGGGCCgGGGGGUc- -3' miRNA: 3'- -AGCUGGC---ACUU--------GCCUGGgCCCCCAuu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 81304 | 0.68 | 0.688686 |
Target: 5'- aUCGACUGgguaagcuACGGGCCaGGGGGg-- -3' miRNA: 3'- -AGCUGGCacu-----UGCCUGGgCCCCCauu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 36384 | 0.68 | 0.662679 |
Target: 5'- cUCGACCGcggucuuaggcucgGGGCGGGCCCucuugguucgaGGGGGc-- -3' miRNA: 3'- -AGCUGGCa-------------CUUGCCUGGG-----------CCCCCauu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 83535 | 0.67 | 0.718302 |
Target: 5'- aUCGcACCG-GuAGCGGGCUCGGcGGGg-- -3' miRNA: 3'- -AGC-UGGCaC-UUGCCUGGGCC-CCCauu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 12690 | 0.67 | 0.698615 |
Target: 5'- cCGACCccGGACGcGACCCGGGaGUc- -3' miRNA: 3'- aGCUGGcaCUUGC-CUGGGCCCcCAuu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 128244 | 0.67 | 0.698615 |
Target: 5'- cCGACCccGGACGcGACCCGGGaGUc- -3' miRNA: 3'- aGCUGGcaCUUGC-CUGGGCCCcCAuu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 32597 | 0.67 | 0.718302 |
Target: 5'- gCGACCG-GGACGGGCguuuacgguCCGGGGc--- -3' miRNA: 3'- aGCUGGCaCUUGCCUG---------GGCCCCcauu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 64248 | 0.67 | 0.718302 |
Target: 5'- gUUG-UCGUGAugagcuCGGucuccgGCCCGGGGGUGGg -3' miRNA: 3'- -AGCuGGCACUu-----GCC------UGGGCCCCCAUU- -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 49767 | 0.67 | 0.737704 |
Target: 5'- cUCGGCCGUGcuGACGGugguguacaACCCcccugugcuGGGGGg-- -3' miRNA: 3'- -AGCUGGCAC--UUGCC---------UGGG---------CCCCCauu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 109852 | 0.67 | 0.698615 |
Target: 5'- uUCGGCCucGAGCGcGCCCGGGGcgauGUGAc -3' miRNA: 3'- -AGCUGGcaCUUGCcUGGGCCCC----CAUU- -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 26391 | 0.67 | 0.70849 |
Target: 5'- gUCGACCca-GACGGGCCCGGGu---- -3' miRNA: 3'- -AGCUGGcacUUGCCUGGGCCCccauu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home