miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2991 5' -62.8 NC_001493.1 + 64602 0.66 0.606023
Target:  5'- gCUgUUGUGcugacGAGCCGCGCCCGUg -3'
miRNA:   3'- -GAgGGCACuagc-CUCGGCGCGGGCGa -5'
2991 5' -62.8 NC_001493.1 + 91781 0.66 0.586448
Target:  5'- -cCCCGUucccaGA-CGGAgGgUGCGCCCGCg -3'
miRNA:   3'- gaGGGCA-----CUaGCCU-CgGCGCGGGCGa -5'
2991 5' -62.8 NC_001493.1 + 38013 0.66 0.586448
Target:  5'- ---gCGaUGAUCGGGGCCGUGUaCGCg -3'
miRNA:   3'- gaggGC-ACUAGCCUCGGCGCGgGCGa -5'
2991 5' -62.8 NC_001493.1 + 10665 0.67 0.528638
Target:  5'- gUCUCG-GAcCGGGGCUGUGCCCa-- -3'
miRNA:   3'- gAGGGCaCUaGCCUCGGCGCGGGcga -5'
2991 5' -62.8 NC_001493.1 + 10588 0.67 0.528638
Target:  5'- gUCUCG-GAcCGGGGCUGUGCCCa-- -3'
miRNA:   3'- gAGGGCaCUaGCCUCGGCGCGGGcga -5'
2991 5' -62.8 NC_001493.1 + 126143 0.67 0.528638
Target:  5'- gUCUCG-GAcCGGGGCUGUGCCCa-- -3'
miRNA:   3'- gAGGGCaCUaGCCUCGGCGCGGGcga -5'
2991 5' -62.8 NC_001493.1 + 126220 0.67 0.528638
Target:  5'- gUCUCG-GAcCGGGGCUGUGCCCa-- -3'
miRNA:   3'- gAGGGCaCUaGCCUCGGCGCGGGcga -5'
2991 5' -62.8 NC_001493.1 + 19891 0.67 0.519194
Target:  5'- gUCCCcc-GUCGGgAGUCGCGCCgGCc -3'
miRNA:   3'- gAGGGcacUAGCC-UCGGCGCGGgCGa -5'
2991 5' -62.8 NC_001493.1 + 21006 0.67 0.509817
Target:  5'- -gCCUacaaGAUCGGcGCCGCGCCgCGCc -3'
miRNA:   3'- gaGGGca--CUAGCCuCGGCGCGG-GCGa -5'
2991 5' -62.8 NC_001493.1 + 102300 0.67 0.500511
Target:  5'- gCUCCCccucgGUGcUCaGGGCCGCcuguGCCCGCc -3'
miRNA:   3'- -GAGGG-----CACuAGcCUCGGCG----CGGGCGa -5'
2991 5' -62.8 NC_001493.1 + 17984 0.67 0.491281
Target:  5'- cCUCCCacucGAucaguuUCGGGGCCGCGUCCa-- -3'
miRNA:   3'- -GAGGGca--CU------AGCCUCGGCGCGGGcga -5'
2991 5' -62.8 NC_001493.1 + 133539 0.67 0.491281
Target:  5'- cCUCCCacucGAucaguuUCGGGGCCGCGUCCa-- -3'
miRNA:   3'- -GAGGGca--CU------AGCCUCGGCGCGGGcga -5'
2991 5' -62.8 NC_001493.1 + 96251 0.68 0.446395
Target:  5'- -aUCgGaUGaAUCGGGGCCguaGCGCCCGCg -3'
miRNA:   3'- gaGGgC-AC-UAGCCUCGG---CGCGGGCGa -5'
2991 5' -62.8 NC_001493.1 + 13109 0.68 0.437693
Target:  5'- aUCUCGg---CGGcGGCCaGCGCCCGCg -3'
miRNA:   3'- gAGGGCacuaGCC-UCGG-CGCGGGCGa -5'
2991 5' -62.8 NC_001493.1 + 128663 0.68 0.437693
Target:  5'- aUCUCGg---CGGcGGCCaGCGCCCGCg -3'
miRNA:   3'- gAGGGCacuaGCC-UCGG-CGCGGGCGa -5'
2991 5' -62.8 NC_001493.1 + 12425 0.69 0.429089
Target:  5'- -cCCCGaccucacauUGAUaUGGA-CCGCGCCCGCg -3'
miRNA:   3'- gaGGGC---------ACUA-GCCUcGGCGCGGGCGa -5'
2991 5' -62.8 NC_001493.1 + 127979 0.69 0.429089
Target:  5'- -cCCCGaccucacauUGAUaUGGA-CCGCGCCCGCg -3'
miRNA:   3'- gaGGGC---------ACUA-GCCUcGGCGCGGGCGa -5'
2991 5' -62.8 NC_001493.1 + 68384 0.69 0.419741
Target:  5'- gCUCCCGUaacugucGAgUgGGAGCCGUGUUCGUUa -3'
miRNA:   3'- -GAGGGCA-------CU-AgCCUCGGCGCGGGCGA- -5'
2991 5' -62.8 NC_001493.1 + 8317 0.69 0.395698
Target:  5'- -cUCCGUGG-CGc-GCCGUGCCCGCUu -3'
miRNA:   3'- gaGGGCACUaGCcuCGGCGCGGGCGA- -5'
2991 5' -62.8 NC_001493.1 + 123871 0.69 0.395698
Target:  5'- -cUCCGUGG-CGc-GCCGUGCCCGCUu -3'
miRNA:   3'- gaGGGCACUaGCcuCGGCGCGGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.