Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 36270 | 0.67 | 0.360799 |
Target: 5'- cGCCGUACCGUGaucuCGCGgcGGCAcuGAg -3' miRNA: 3'- aCGGCGUGGCGCgc--GCGU--UCGUuuCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 14648 | 0.68 | 0.318986 |
Target: 5'- gGCCGaggaaCGCGCGCGcCAGGCGc--- -3' miRNA: 3'- aCGGCgug--GCGCGCGC-GUUCGUuucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 29972 | 0.68 | 0.311073 |
Target: 5'- aUGCCGC-CCGuCGCGUGCcgcacAGCGccGGa -3' miRNA: 3'- -ACGGCGuGGC-GCGCGCGu----UCGUuuCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 1254 | 0.68 | 0.311073 |
Target: 5'- uUGCgCGCGCgGUGCG-GCAGGCuuGGc -3' miRNA: 3'- -ACG-GCGUGgCGCGCgCGUUCGuuUCu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 11678 | 0.68 | 0.31029 |
Target: 5'- cGCCGCaaccccggcgccGCCGCGCGcCGCGcaugaccAGCu-GGAc -3' miRNA: 3'- aCGGCG------------UGGCGCGC-GCGU-------UCGuuUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 26958 | 0.69 | 0.295697 |
Target: 5'- cUGCUGCAagUCG-GCGCGCAGacGCAGAGc -3' miRNA: 3'- -ACGGCGU--GGCgCGCGCGUU--CGUUUCu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 12380 | 0.69 | 0.288233 |
Target: 5'- gGCUggGCACUGCGCGCGCuGGUc---- -3' miRNA: 3'- aCGG--CGUGGCGCGCGCGuUCGuuucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 24514 | 0.69 | 0.272336 |
Target: 5'- uUGCCGCGCUGCaaGCGgccauauUGCAGGCGguugcccGAGAa -3' miRNA: 3'- -ACGGCGUGGCG--CGC-------GCGUUCGU-------UUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 33123 | 0.69 | 0.266732 |
Target: 5'- -aCCGCGCC-UGCGCGCu-GUAGAGGg -3' miRNA: 3'- acGGCGUGGcGCGCGCGuuCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 20378 | 0.7 | 0.259859 |
Target: 5'- aGCCGuCACCGCGUaggGCGCuuccGCGAAc- -3' miRNA: 3'- aCGGC-GUGGCGCG---CGCGuu--CGUUUcu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 26299 | 0.7 | 0.253131 |
Target: 5'- aG-CGCGCCGCGCGCuuuuacuaccuGCA-GCAGAGc -3' miRNA: 3'- aCgGCGUGGCGCGCG-----------CGUuCGUUUCu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 32024 | 0.7 | 0.253131 |
Target: 5'- uUGCUGUuCCGCGC-UGC-AGCAAAGGg -3' miRNA: 3'- -ACGGCGuGGCGCGcGCGuUCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 25376 | 0.7 | 0.246548 |
Target: 5'- cUGCCGCcugggcaaugaGCUGCGCGaccaGCGaauggugggcGGCAAGGAc -3' miRNA: 3'- -ACGGCG-----------UGGCGCGCg---CGU----------UCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 9646 | 0.7 | 0.245897 |
Target: 5'- cGCCGCGCucgaugcacugauCGCGUGCGCcccuGGCGAu-- -3' miRNA: 3'- aCGGCGUG-------------GCGCGCGCGu---UCGUUucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 12877 | 0.7 | 0.233806 |
Target: 5'- -aCCGCGCCGCuCGCGCGgcacuGGCGAGc- -3' miRNA: 3'- acGGCGUGGCGcGCGCGU-----UCGUUUcu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 22518 | 0.7 | 0.227645 |
Target: 5'- cUGCCGCACCaaccacuaccgGCGCacagcCGCcGGCGGAGGa -3' miRNA: 3'- -ACGGCGUGG-----------CGCGc----GCGuUCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 2002 | 0.71 | 0.221622 |
Target: 5'- aUGCCGCGggcaaGCGCGCGCGGcuGCAccAGGGg -3' miRNA: 3'- -ACGGCGUgg---CGCGCGCGUU--CGU--UUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 22972 | 0.71 | 0.215735 |
Target: 5'- cGCUuCAUCGUGCaGCGCGAGCGucuGGAu -3' miRNA: 3'- aCGGcGUGGCGCG-CGCGUUCGUu--UCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 19256 | 0.71 | 0.209983 |
Target: 5'- cGCCGgccUACCuGCG-GCGCAAGCgAAAGAa -3' miRNA: 3'- aCGGC---GUGG-CGCgCGCGUUCG-UUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 35941 | 0.71 | 0.198875 |
Target: 5'- cGCCGCcgGCCGCGCggaucGCGCcGGCAu--- -3' miRNA: 3'- aCGGCG--UGGCGCG-----CGCGuUCGUuucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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