miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30404 3' -57.9 NC_006548.1 + 27094 0.67 0.360799
Target:  5'- aGCCaGUACgcaGCGCcucaaugcugcuGUGCAAGCGGGGAa -3'
miRNA:   3'- aCGG-CGUGg--CGCG------------CGCGUUCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 14648 0.68 0.318986
Target:  5'- gGCCGaggaaCGCGCGCGcCAGGCGc--- -3'
miRNA:   3'- aCGGCgug--GCGCGCGC-GUUCGUuucu -5'
30404 3' -57.9 NC_006548.1 + 29972 0.68 0.311073
Target:  5'- aUGCCGC-CCGuCGCGUGCcgcacAGCGccGGa -3'
miRNA:   3'- -ACGGCGuGGC-GCGCGCGu----UCGUuuCU- -5'
30404 3' -57.9 NC_006548.1 + 1254 0.68 0.311073
Target:  5'- uUGCgCGCGCgGUGCG-GCAGGCuuGGc -3'
miRNA:   3'- -ACG-GCGUGgCGCGCgCGUUCGuuUCu -5'
30404 3' -57.9 NC_006548.1 + 11678 0.68 0.31029
Target:  5'- cGCCGCaaccccggcgccGCCGCGCGcCGCGcaugaccAGCu-GGAc -3'
miRNA:   3'- aCGGCG------------UGGCGCGC-GCGU-------UCGuuUCU- -5'
30404 3' -57.9 NC_006548.1 + 26958 0.69 0.295697
Target:  5'- cUGCUGCAagUCG-GCGCGCAGacGCAGAGc -3'
miRNA:   3'- -ACGGCGU--GGCgCGCGCGUU--CGUUUCu -5'
30404 3' -57.9 NC_006548.1 + 12380 0.69 0.288233
Target:  5'- gGCUggGCACUGCGCGCGCuGGUc---- -3'
miRNA:   3'- aCGG--CGUGGCGCGCGCGuUCGuuucu -5'
30404 3' -57.9 NC_006548.1 + 24514 0.69 0.272336
Target:  5'- uUGCCGCGCUGCaaGCGgccauauUGCAGGCGguugcccGAGAa -3'
miRNA:   3'- -ACGGCGUGGCG--CGC-------GCGUUCGU-------UUCU- -5'
30404 3' -57.9 NC_006548.1 + 33123 0.69 0.266732
Target:  5'- -aCCGCGCC-UGCGCGCu-GUAGAGGg -3'
miRNA:   3'- acGGCGUGGcGCGCGCGuuCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 20378 0.7 0.259859
Target:  5'- aGCCGuCACCGCGUaggGCGCuuccGCGAAc- -3'
miRNA:   3'- aCGGC-GUGGCGCG---CGCGuu--CGUUUcu -5'
30404 3' -57.9 NC_006548.1 + 32024 0.7 0.253131
Target:  5'- uUGCUGUuCCGCGC-UGC-AGCAAAGGg -3'
miRNA:   3'- -ACGGCGuGGCGCGcGCGuUCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 26299 0.7 0.253131
Target:  5'- aG-CGCGCCGCGCGCuuuuacuaccuGCA-GCAGAGc -3'
miRNA:   3'- aCgGCGUGGCGCGCG-----------CGUuCGUUUCu -5'
30404 3' -57.9 NC_006548.1 + 25376 0.7 0.246548
Target:  5'- cUGCCGCcugggcaaugaGCUGCGCGaccaGCGaauggugggcGGCAAGGAc -3'
miRNA:   3'- -ACGGCG-----------UGGCGCGCg---CGU----------UCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 9646 0.7 0.245897
Target:  5'- cGCCGCGCucgaugcacugauCGCGUGCGCcccuGGCGAu-- -3'
miRNA:   3'- aCGGCGUG-------------GCGCGCGCGu---UCGUUucu -5'
30404 3' -57.9 NC_006548.1 + 12877 0.7 0.233806
Target:  5'- -aCCGCGCCGCuCGCGCGgcacuGGCGAGc- -3'
miRNA:   3'- acGGCGUGGCGcGCGCGU-----UCGUUUcu -5'
30404 3' -57.9 NC_006548.1 + 22518 0.7 0.227645
Target:  5'- cUGCCGCACCaaccacuaccgGCGCacagcCGCcGGCGGAGGa -3'
miRNA:   3'- -ACGGCGUGG-----------CGCGc----GCGuUCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 2002 0.71 0.221622
Target:  5'- aUGCCGCGggcaaGCGCGCGCGGcuGCAccAGGGg -3'
miRNA:   3'- -ACGGCGUgg---CGCGCGCGUU--CGU--UUCU- -5'
30404 3' -57.9 NC_006548.1 + 22972 0.71 0.215735
Target:  5'- cGCUuCAUCGUGCaGCGCGAGCGucuGGAu -3'
miRNA:   3'- aCGGcGUGGCGCG-CGCGUUCGUu--UCU- -5'
30404 3' -57.9 NC_006548.1 + 19256 0.71 0.209983
Target:  5'- cGCCGgccUACCuGCG-GCGCAAGCgAAAGAa -3'
miRNA:   3'- aCGGC---GUGG-CGCgCGCGUUCG-UUUCU- -5'
30404 3' -57.9 NC_006548.1 + 35941 0.71 0.198875
Target:  5'- cGCCGCcgGCCGCGCggaucGCGCcGGCAu--- -3'
miRNA:   3'- aCGGCG--UGGCGCG-----CGCGuUCGUuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.