Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 32024 | 0.7 | 0.253131 |
Target: 5'- uUGCUGUuCCGCGC-UGC-AGCAAAGGg -3' miRNA: 3'- -ACGGCGuGGCGCGcGCGuUCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 26299 | 0.7 | 0.253131 |
Target: 5'- aG-CGCGCCGCGCGCuuuuacuaccuGCA-GCAGAGc -3' miRNA: 3'- aCgGCGUGGCGCGCG-----------CGUuCGUUUCu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 20378 | 0.7 | 0.259859 |
Target: 5'- aGCCGuCACCGCGUaggGCGCuuccGCGAAc- -3' miRNA: 3'- aCGGC-GUGGCGCG---CGCGuu--CGUUUcu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 33123 | 0.69 | 0.266732 |
Target: 5'- -aCCGCGCC-UGCGCGCu-GUAGAGGg -3' miRNA: 3'- acGGCGUGGcGCGCGCGuuCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 24514 | 0.69 | 0.272336 |
Target: 5'- uUGCCGCGCUGCaaGCGgccauauUGCAGGCGguugcccGAGAa -3' miRNA: 3'- -ACGGCGUGGCG--CGC-------GCGUUCGU-------UUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 12380 | 0.69 | 0.288233 |
Target: 5'- gGCUggGCACUGCGCGCGCuGGUc---- -3' miRNA: 3'- aCGG--CGUGGCGCGCGCGuUCGuuucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 26958 | 0.69 | 0.295697 |
Target: 5'- cUGCUGCAagUCG-GCGCGCAGacGCAGAGc -3' miRNA: 3'- -ACGGCGU--GGCgCGCGCGUU--CGUUUCu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 11678 | 0.68 | 0.31029 |
Target: 5'- cGCCGCaaccccggcgccGCCGCGCGcCGCGcaugaccAGCu-GGAc -3' miRNA: 3'- aCGGCG------------UGGCGCGC-GCGU-------UCGuuUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 29972 | 0.68 | 0.311073 |
Target: 5'- aUGCCGC-CCGuCGCGUGCcgcacAGCGccGGa -3' miRNA: 3'- -ACGGCGuGGC-GCGCGCGu----UCGUuuCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 1254 | 0.68 | 0.311073 |
Target: 5'- uUGCgCGCGCgGUGCG-GCAGGCuuGGc -3' miRNA: 3'- -ACG-GCGUGgCGCGCgCGUUCGuuUCu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 14648 | 0.68 | 0.318986 |
Target: 5'- gGCCGaggaaCGCGCGCGcCAGGCGc--- -3' miRNA: 3'- aCGGCgug--GCGCGCGC-GUUCGUuucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 27094 | 0.67 | 0.360799 |
Target: 5'- aGCCaGUACgcaGCGCcucaaugcugcuGUGCAAGCGGGGAa -3' miRNA: 3'- aCGG-CGUGg--CGCG------------CGCGUUCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 28714 | 0.67 | 0.360799 |
Target: 5'- gGCCGgGCUGCGuUGCGUGAGUAcGAGc -3' miRNA: 3'- aCGGCgUGGCGC-GCGCGUUCGU-UUCu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 36270 | 0.67 | 0.360799 |
Target: 5'- cGCCGUACCGUGaucuCGCGgcGGCAcuGAg -3' miRNA: 3'- aCGGCGUGGCGCgc--GCGU--UCGUuuCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 13106 | 0.67 | 0.369607 |
Target: 5'- aGCaGCAggUCGCGCGCGCcaaccAGGcCGAGGAg -3' miRNA: 3'- aCGgCGU--GGCGCGCGCG-----UUC-GUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 29716 | 0.67 | 0.369607 |
Target: 5'- cUGCCGCACCG-GCacCGCuGGCAgcGGc -3' miRNA: 3'- -ACGGCGUGGCgCGc-GCGuUCGUuuCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 36401 | 0.67 | 0.378561 |
Target: 5'- gGCCGCA-UGCccaGCGC-AGCGAGGAu -3' miRNA: 3'- aCGGCGUgGCGcg-CGCGuUCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 33965 | 0.67 | 0.3969 |
Target: 5'- aGCUGUACCGUG-GCGCucGGCcgucGAAGGc -3' miRNA: 3'- aCGGCGUGGCGCgCGCGu-UCG----UUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 1934 | 0.67 | 0.3969 |
Target: 5'- cUGgUGCAgCCGCGCGCGCuugcccgcGGCAu--- -3' miRNA: 3'- -ACgGCGU-GGCGCGCGCGu-------UCGUuucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 25935 | 0.67 | 0.3969 |
Target: 5'- cGUCGUAacggcCCGCGCGgGCcAGCAGGc- -3' miRNA: 3'- aCGGCGU-----GGCGCGCgCGuUCGUUUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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