Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 1311 | 1.08 | 0.000332 |
Target: 5'- cUGCCGCACCGCGCGCGCAAGCAAAGAc -3' miRNA: 3'- -ACGGCGUGGCGCGCGCGUUCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 26881 | 0.8 | 0.04431 |
Target: 5'- uUGCCGCAauccUCGCGCGCGCGugAGCcGGGAg -3' miRNA: 3'- -ACGGCGU----GGCGCGCGCGU--UCGuUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 36743 | 0.77 | 0.0849 |
Target: 5'- aGCCGCACCaGCucgGCGaCGCucGCAGAGAg -3' miRNA: 3'- aCGGCGUGG-CG---CGC-GCGuuCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 33016 | 0.76 | 0.087414 |
Target: 5'- cGCUGCACCGgGCGCGCcAGUu--GAa -3' miRNA: 3'- aCGGCGUGGCgCGCGCGuUCGuuuCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 12996 | 0.76 | 0.089998 |
Target: 5'- cGCacaGCACCGCGCucaGCGCGAGCc-AGAa -3' miRNA: 3'- aCGg--CGUGGCGCG---CGCGUUCGuuUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 7206 | 0.75 | 0.110221 |
Target: 5'- aGCgCGCACCGCGUaaGCGGcGCAAGGAc -3' miRNA: 3'- aCG-GCGUGGCGCGcgCGUU-CGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 25425 | 0.74 | 0.130869 |
Target: 5'- uUGCCagGCCGUGCGCGCAGGCc---- -3' miRNA: 3'- -ACGGcgUGGCGCGCGCGUUCGuuucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 13623 | 0.72 | 0.16858 |
Target: 5'- uUGCC--GCCGCcCGCGCAGGCAccGAGGa -3' miRNA: 3'- -ACGGcgUGGCGcGCGCGUUCGU--UUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 6460 | 0.72 | 0.176718 |
Target: 5'- cGCCGCGCCugGCGCGUGCAcGaugaccucgaugccCAGGGAg -3' miRNA: 3'- aCGGCGUGG--CGCGCGCGUuC--------------GUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 7812 | 0.72 | 0.17819 |
Target: 5'- cUGCCGCgaGCUGCGCaaggcucuGCGCGAccuccGCGAGGAc -3' miRNA: 3'- -ACGGCG--UGGCGCG--------CGCGUU-----CGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 36595 | 0.72 | 0.17819 |
Target: 5'- gGCCgGCACCGCG-GUGCucgcGCGGGGAu -3' miRNA: 3'- aCGG-CGUGGCGCgCGCGuu--CGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 28850 | 0.72 | 0.192987 |
Target: 5'- cUGCCGCAUCcagggucgcccagGCG-GCGCGAGCAcGGGc -3' miRNA: 3'- -ACGGCGUGG-------------CGCgCGCGUUCGUuUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 35941 | 0.71 | 0.198875 |
Target: 5'- cGCCGCcgGCCGCGCggaucGCGCcGGCAu--- -3' miRNA: 3'- aCGGCG--UGGCGCG-----CGCGuUCGUuucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 19256 | 0.71 | 0.209983 |
Target: 5'- cGCCGgccUACCuGCG-GCGCAAGCgAAAGAa -3' miRNA: 3'- aCGGC---GUGG-CGCgCGCGUUCG-UUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 22972 | 0.71 | 0.215735 |
Target: 5'- cGCUuCAUCGUGCaGCGCGAGCGucuGGAu -3' miRNA: 3'- aCGGcGUGGCGCG-CGCGUUCGUu--UCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 2002 | 0.71 | 0.221622 |
Target: 5'- aUGCCGCGggcaaGCGCGCGCGGcuGCAccAGGGg -3' miRNA: 3'- -ACGGCGUgg---CGCGCGCGUU--CGU--UUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 22518 | 0.7 | 0.227645 |
Target: 5'- cUGCCGCACCaaccacuaccgGCGCacagcCGCcGGCGGAGGa -3' miRNA: 3'- -ACGGCGUGG-----------CGCGc----GCGuUCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 12877 | 0.7 | 0.233806 |
Target: 5'- -aCCGCGCCGCuCGCGCGgcacuGGCGAGc- -3' miRNA: 3'- acGGCGUGGCGcGCGCGU-----UCGUUUcu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 9646 | 0.7 | 0.245897 |
Target: 5'- cGCCGCGCucgaugcacugauCGCGUGCGCcccuGGCGAu-- -3' miRNA: 3'- aCGGCGUG-------------GCGCGCGCGu---UCGUUucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 25376 | 0.7 | 0.246548 |
Target: 5'- cUGCCGCcugggcaaugaGCUGCGCGaccaGCGaauggugggcGGCAAGGAc -3' miRNA: 3'- -ACGGCG-----------UGGCGCGCg---CGU----------UCGUUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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