miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30404 3' -57.9 NC_006548.1 + 16179 0.66 0.415801
Target:  5'- gUGCCGCACgGCuucgGCGCGguGcGCGGu-- -3'
miRNA:   3'- -ACGGCGUGgCG----CGCGCguU-CGUUucu -5'
30404 3' -57.9 NC_006548.1 + 28714 0.67 0.360799
Target:  5'- gGCCGgGCUGCGuUGCGUGAGUAcGAGc -3'
miRNA:   3'- aCGGCgUGGCGC-GCGCGUUCGU-UUCu -5'
30404 3' -57.9 NC_006548.1 + 36270 0.67 0.360799
Target:  5'- cGCCGUACCGUGaucuCGCGgcGGCAcuGAg -3'
miRNA:   3'- aCGGCGUGGCGCgc--GCGU--UCGUuuCU- -5'
30404 3' -57.9 NC_006548.1 + 13106 0.67 0.369607
Target:  5'- aGCaGCAggUCGCGCGCGCcaaccAGGcCGAGGAg -3'
miRNA:   3'- aCGgCGU--GGCGCGCGCG-----UUC-GUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 1934 0.67 0.3969
Target:  5'- cUGgUGCAgCCGCGCGCGCuugcccgcGGCAu--- -3'
miRNA:   3'- -ACgGCGU-GGCGCGCGCGu-------UCGUuucu -5'
30404 3' -57.9 NC_006548.1 + 33965 0.67 0.3969
Target:  5'- aGCUGUACCGUG-GCGCucGGCcgucGAAGGc -3'
miRNA:   3'- aCGGCGUGGCGCgCGCGu-UCG----UUUCU- -5'
30404 3' -57.9 NC_006548.1 + 16500 0.67 0.406281
Target:  5'- aGCaGCAgCUGCaGCGCGUggGCuGGGAc -3'
miRNA:   3'- aCGgCGU-GGCG-CGCGCGuuCGuUUCU- -5'
30404 3' -57.9 NC_006548.1 + 36635 0.67 0.406281
Target:  5'- gUGCCaGCGCCGCaugaggccgGCGCGCugaucuGGUucuacGAGGAu -3'
miRNA:   3'- -ACGG-CGUGGCG---------CGCGCGu-----UCG-----UUUCU- -5'
30404 3' -57.9 NC_006548.1 + 16969 0.67 0.406281
Target:  5'- aUGCC-CGCCG-GCaUGCAGGCGGAGc -3'
miRNA:   3'- -ACGGcGUGGCgCGcGCGUUCGUUUCu -5'
30404 3' -57.9 NC_006548.1 + 27094 0.67 0.360799
Target:  5'- aGCCaGUACgcaGCGCcucaaugcugcuGUGCAAGCGGGGAa -3'
miRNA:   3'- aCGG-CGUGg--CGCG------------CGCGUUCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 14648 0.68 0.318986
Target:  5'- gGCCGaggaaCGCGCGCGcCAGGCGc--- -3'
miRNA:   3'- aCGGCgug--GCGCGCGC-GUUCGUuucu -5'
30404 3' -57.9 NC_006548.1 + 1254 0.68 0.311073
Target:  5'- uUGCgCGCGCgGUGCG-GCAGGCuuGGc -3'
miRNA:   3'- -ACG-GCGUGgCGCGCgCGUUCGuuUCu -5'
30404 3' -57.9 NC_006548.1 + 6460 0.72 0.176718
Target:  5'- cGCCGCGCCugGCGCGUGCAcGaugaccucgaugccCAGGGAg -3'
miRNA:   3'- aCGGCGUGG--CGCGCGCGUuC--------------GUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 36595 0.72 0.17819
Target:  5'- gGCCgGCACCGCG-GUGCucgcGCGGGGAu -3'
miRNA:   3'- aCGG-CGUGGCGCgCGCGuu--CGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 19256 0.71 0.209983
Target:  5'- cGCCGgccUACCuGCG-GCGCAAGCgAAAGAa -3'
miRNA:   3'- aCGGC---GUGG-CGCgCGCGUUCG-UUUCU- -5'
30404 3' -57.9 NC_006548.1 + 22972 0.71 0.215735
Target:  5'- cGCUuCAUCGUGCaGCGCGAGCGucuGGAu -3'
miRNA:   3'- aCGGcGUGGCGCG-CGCGUUCGUu--UCU- -5'
30404 3' -57.9 NC_006548.1 + 22518 0.7 0.227645
Target:  5'- cUGCCGCACCaaccacuaccgGCGCacagcCGCcGGCGGAGGa -3'
miRNA:   3'- -ACGGCGUGG-----------CGCGc----GCGuUCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 26299 0.7 0.253131
Target:  5'- aG-CGCGCCGCGCGCuuuuacuaccuGCA-GCAGAGc -3'
miRNA:   3'- aCgGCGUGGCGCGCG-----------CGUuCGUUUCu -5'
30404 3' -57.9 NC_006548.1 + 12380 0.69 0.288233
Target:  5'- gGCUggGCACUGCGCGCGCuGGUc---- -3'
miRNA:   3'- aCGG--CGUGGCGCGCGCGuUCGuuucu -5'
30404 3' -57.9 NC_006548.1 + 11678 0.68 0.31029
Target:  5'- cGCCGCaaccccggcgccGCCGCGCGcCGCGcaugaccAGCu-GGAc -3'
miRNA:   3'- aCGGCG------------UGGCGCGC-GCGU-------UCGuuUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.