Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 1311 | 1.08 | 0.000332 |
Target: 5'- cUGCCGCACCGCGCGCGCAAGCAAAGAc -3' miRNA: 3'- -ACGGCGUGGCGCGCGCGUUCGUUUCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 24514 | 0.69 | 0.272336 |
Target: 5'- uUGCCGCGCUGCaaGCGgccauauUGCAGGCGguugcccGAGAa -3' miRNA: 3'- -ACGGCGUGGCG--CGC-------GCGUUCGU-------UUCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 29972 | 0.68 | 0.311073 |
Target: 5'- aUGCCGC-CCGuCGCGUGCcgcacAGCGccGGa -3' miRNA: 3'- -ACGGCGuGGC-GCGCGCGu----UCGUuuCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 28600 | 0.67 | 0.406281 |
Target: 5'- cGCCGCgaccugGCCG-GCGC-CGAGCAGGa- -3' miRNA: 3'- aCGGCG------UGGCgCGCGcGUUCGUUUcu -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 7206 | 0.75 | 0.110221 |
Target: 5'- aGCgCGCACCGCGUaaGCGGcGCAAGGAc -3' miRNA: 3'- aCG-GCGUGGCGCGcgCGUU-CGUUUCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 25425 | 0.74 | 0.130869 |
Target: 5'- uUGCCagGCCGUGCGCGCAGGCc---- -3' miRNA: 3'- -ACGGcgUGGCGCGCGCGUUCGuuucu -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 7812 | 0.72 | 0.17819 |
Target: 5'- cUGCCGCgaGCUGCGCaaggcucuGCGCGAccuccGCGAGGAc -3' miRNA: 3'- -ACGGCG--UGGCGCG--------CGCGUU-----CGUUUCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 28850 | 0.72 | 0.192987 |
Target: 5'- cUGCCGCAUCcagggucgcccagGCG-GCGCGAGCAcGGGc -3' miRNA: 3'- -ACGGCGUGG-------------CGCgCGCGUUCGUuUCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 12877 | 0.7 | 0.233806 |
Target: 5'- -aCCGCGCCGCuCGCGCGgcacuGGCGAGc- -3' miRNA: 3'- acGGCGUGGCGcGCGCGU-----UCGUUUcu -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 33123 | 0.69 | 0.266732 |
Target: 5'- -aCCGCGCC-UGCGCGCu-GUAGAGGg -3' miRNA: 3'- acGGCGUGGcGCGCGCGuuCGUUUCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 25376 | 0.7 | 0.246548 |
Target: 5'- cUGCCGCcugggcaaugaGCUGCGCGaccaGCGaauggugggcGGCAAGGAc -3' miRNA: 3'- -ACGGCG-----------UGGCGCGCg---CGU----------UCGUUUCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 2002 | 0.71 | 0.221622 |
Target: 5'- aUGCCGCGggcaaGCGCGCGCGGcuGCAccAGGGg -3' miRNA: 3'- -ACGGCGUgg---CGCGCGCGUU--CGU--UUCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 26881 | 0.8 | 0.04431 |
Target: 5'- uUGCCGCAauccUCGCGCGCGCGugAGCcGGGAg -3' miRNA: 3'- -ACGGCGU----GGCGCGCGCGU--UCGuUUCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 32024 | 0.7 | 0.253131 |
Target: 5'- uUGCUGUuCCGCGC-UGC-AGCAAAGGg -3' miRNA: 3'- -ACGGCGuGGCGCGcGCGuUCGUUUCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 33016 | 0.76 | 0.087414 |
Target: 5'- cGCUGCACCGgGCGCGCcAGUu--GAa -3' miRNA: 3'- aCGGCGUGGCgCGCGCGuUCGuuuCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 35941 | 0.71 | 0.198875 |
Target: 5'- cGCCGCcgGCCGCGCggaucGCGCcGGCAu--- -3' miRNA: 3'- aCGGCG--UGGCGCG-----CGCGuUCGUuucu -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 20378 | 0.7 | 0.259859 |
Target: 5'- aGCCGuCACCGCGUaggGCGCuuccGCGAAc- -3' miRNA: 3'- aCGGC-GUGGCGCG---CGCGuu--CGUUUcu -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 26958 | 0.69 | 0.295697 |
Target: 5'- cUGCUGCAagUCG-GCGCGCAGacGCAGAGc -3' miRNA: 3'- -ACGGCGU--GGCgCGCGCGUU--CGUUUCu -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 12996 | 0.76 | 0.089998 |
Target: 5'- cGCacaGCACCGCGCucaGCGCGAGCc-AGAa -3' miRNA: 3'- aCGg--CGUGGCGCG---CGCGUUCGuuUCU- -5' |
|||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 13623 | 0.72 | 0.16858 |
Target: 5'- uUGCC--GCCGCcCGCGCAGGCAccGAGGa -3' miRNA: 3'- -ACGGcgUGGCGcGCGCGUUCGU--UUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home