Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30404 | 3' | -57.9 | NC_006548.1 | + | 12815 | 0.66 | 0.425456 |
Target: 5'- cGCCaGUGCCGCGCGaGCGGcGCGGu-- -3' miRNA: 3'- aCGG-CGUGGCGCGCgCGUU-CGUUucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 16179 | 0.66 | 0.415801 |
Target: 5'- gUGCCGCACgGCuucgGCGCGguGcGCGGu-- -3' miRNA: 3'- -ACGGCGUGgCG----CGCGCguU-CGUUucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 21743 | 0.66 | 0.455201 |
Target: 5'- gGCCuggacGCGCCgGUGC-CGCAGGCGGAu- -3' miRNA: 3'- aCGG-----CGUGG-CGCGcGCGUUCGUUUcu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 12151 | 0.66 | 0.424485 |
Target: 5'- gGCCGCcgagcaguaucGCCGCGUgcugguucgagcgGCGCAugcugAGUggGGAc -3' miRNA: 3'- aCGGCG-----------UGGCGCG-------------CGCGU-----UCGuuUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 7147 | 0.66 | 0.455201 |
Target: 5'- cGCCGCuuacGCgGUGCGCGCucacGCAc--- -3' miRNA: 3'- aCGGCG----UGgCGCGCGCGuu--CGUuucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 28714 | 0.67 | 0.360799 |
Target: 5'- gGCCGgGCUGCGuUGCGUGAGUAcGAGc -3' miRNA: 3'- aCGGCgUGGCGC-GCGCGUUCGU-UUCu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 16969 | 0.67 | 0.406281 |
Target: 5'- aUGCC-CGCCG-GCaUGCAGGCGGAGc -3' miRNA: 3'- -ACGGcGUGGCgCGcGCGUUCGUUUCu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 36635 | 0.67 | 0.406281 |
Target: 5'- gUGCCaGCGCCGCaugaggccgGCGCGCugaucuGGUucuacGAGGAu -3' miRNA: 3'- -ACGG-CGUGGCG---------CGCGCGu-----UCG-----UUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 16500 | 0.67 | 0.406281 |
Target: 5'- aGCaGCAgCUGCaGCGCGUggGCuGGGAc -3' miRNA: 3'- aCGgCGU-GGCG-CGCGCGuuCGuUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 33965 | 0.67 | 0.3969 |
Target: 5'- aGCUGUACCGUG-GCGCucGGCcgucGAAGGc -3' miRNA: 3'- aCGGCGUGGCGCgCGCGu-UCG----UUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 1934 | 0.67 | 0.3969 |
Target: 5'- cUGgUGCAgCCGCGCGCGCuugcccgcGGCAu--- -3' miRNA: 3'- -ACgGCGU-GGCGCGCGCGu-------UCGUuucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 13106 | 0.67 | 0.369607 |
Target: 5'- aGCaGCAggUCGCGCGCGCcaaccAGGcCGAGGAg -3' miRNA: 3'- aCGgCGU--GGCGCGCGCG-----UUC-GUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 36270 | 0.67 | 0.360799 |
Target: 5'- cGCCGUACCGUGaucuCGCGgcGGCAcuGAg -3' miRNA: 3'- aCGGCGUGGCGCgc--GCGU--UCGUuuCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 27094 | 0.67 | 0.360799 |
Target: 5'- aGCCaGUACgcaGCGCcucaaugcugcuGUGCAAGCGGGGAa -3' miRNA: 3'- aCGG-CGUGg--CGCG------------CGCGUUCGUUUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 28600 | 0.67 | 0.406281 |
Target: 5'- cGCCGCgaccugGCCG-GCGC-CGAGCAGGa- -3' miRNA: 3'- aCGGCG------UGGCgCGCGcGUUCGUUUcu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 12451 | 0.67 | 0.406281 |
Target: 5'- gGUCGUaggugACCaGCGCGCGCAgugcccAGCcuGGAu -3' miRNA: 3'- aCGGCG-----UGG-CGCGCGCGU------UCGuuUCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 19181 | 0.67 | 0.3969 |
Target: 5'- cGCUGCGCUGCcCGCGuUGAGCAc--- -3' miRNA: 3'- aCGGCGUGGCGcGCGC-GUUCGUuucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 29716 | 0.67 | 0.369607 |
Target: 5'- cUGCCGCACCG-GCacCGCuGGCAgcGGc -3' miRNA: 3'- -ACGGCGUGGCgCGc-GCGuUCGUuuCU- -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 21803 | 0.67 | 0.3969 |
Target: 5'- cUGCgGCACCgGCGCGUcCAGGCc---- -3' miRNA: 3'- -ACGgCGUGG-CGCGCGcGUUCGuuucu -5' |
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30404 | 3' | -57.9 | NC_006548.1 | + | 36401 | 0.67 | 0.378561 |
Target: 5'- gGCCGCA-UGCccaGCGC-AGCGAGGAu -3' miRNA: 3'- aCGGCGUgGCGcg-CGCGuUCGUUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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