miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30404 3' -57.9 NC_006548.1 + 1254 0.68 0.311073
Target:  5'- uUGCgCGCGCgGUGCG-GCAGGCuuGGc -3'
miRNA:   3'- -ACG-GCGUGgCGCGCgCGUUCGuuUCu -5'
30404 3' -57.9 NC_006548.1 + 1311 1.08 0.000332
Target:  5'- cUGCCGCACCGCGCGCGCAAGCAAAGAc -3'
miRNA:   3'- -ACGGCGUGGCGCGCGCGUUCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 1934 0.67 0.3969
Target:  5'- cUGgUGCAgCCGCGCGCGCuugcccgcGGCAu--- -3'
miRNA:   3'- -ACgGCGU-GGCGCGCGCGu-------UCGUuucu -5'
30404 3' -57.9 NC_006548.1 + 2002 0.71 0.221622
Target:  5'- aUGCCGCGggcaaGCGCGCGCGGcuGCAccAGGGg -3'
miRNA:   3'- -ACGGCGUgg---CGCGCGCGUU--CGU--UUCU- -5'
30404 3' -57.9 NC_006548.1 + 6460 0.72 0.176718
Target:  5'- cGCCGCGCCugGCGCGUGCAcGaugaccucgaugccCAGGGAg -3'
miRNA:   3'- aCGGCGUGG--CGCGCGCGUuC--------------GUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 7147 0.66 0.455201
Target:  5'- cGCCGCuuacGCgGUGCGCGCucacGCAc--- -3'
miRNA:   3'- aCGGCG----UGgCGCGCGCGuu--CGUuucu -5'
30404 3' -57.9 NC_006548.1 + 7206 0.75 0.110221
Target:  5'- aGCgCGCACCGCGUaaGCGGcGCAAGGAc -3'
miRNA:   3'- aCG-GCGUGGCGCGcgCGUU-CGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 7812 0.72 0.17819
Target:  5'- cUGCCGCgaGCUGCGCaaggcucuGCGCGAccuccGCGAGGAc -3'
miRNA:   3'- -ACGGCG--UGGCGCG--------CGCGUU-----CGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 9646 0.7 0.245897
Target:  5'- cGCCGCGCucgaugcacugauCGCGUGCGCcccuGGCGAu-- -3'
miRNA:   3'- aCGGCGUG-------------GCGCGCGCGu---UCGUUucu -5'
30404 3' -57.9 NC_006548.1 + 11678 0.68 0.31029
Target:  5'- cGCCGCaaccccggcgccGCCGCGCGcCGCGcaugaccAGCu-GGAc -3'
miRNA:   3'- aCGGCG------------UGGCGCGC-GCGU-------UCGuuUCU- -5'
30404 3' -57.9 NC_006548.1 + 12151 0.66 0.424485
Target:  5'- gGCCGCcgagcaguaucGCCGCGUgcugguucgagcgGCGCAugcugAGUggGGAc -3'
miRNA:   3'- aCGGCG-----------UGGCGCG-------------CGCGU-----UCGuuUCU- -5'
30404 3' -57.9 NC_006548.1 + 12380 0.69 0.288233
Target:  5'- gGCUggGCACUGCGCGCGCuGGUc---- -3'
miRNA:   3'- aCGG--CGUGGCGCGCGCGuUCGuuucu -5'
30404 3' -57.9 NC_006548.1 + 12451 0.67 0.406281
Target:  5'- gGUCGUaggugACCaGCGCGCGCAgugcccAGCcuGGAu -3'
miRNA:   3'- aCGGCG-----UGG-CGCGCGCGU------UCGuuUCU- -5'
30404 3' -57.9 NC_006548.1 + 12815 0.66 0.425456
Target:  5'- cGCCaGUGCCGCGCGaGCGGcGCGGu-- -3'
miRNA:   3'- aCGG-CGUGGCGCGCgCGUU-CGUUucu -5'
30404 3' -57.9 NC_006548.1 + 12877 0.7 0.233806
Target:  5'- -aCCGCGCCGCuCGCGCGgcacuGGCGAGc- -3'
miRNA:   3'- acGGCGUGGCGcGCGCGU-----UCGUUUcu -5'
30404 3' -57.9 NC_006548.1 + 12996 0.76 0.089998
Target:  5'- cGCacaGCACCGCGCucaGCGCGAGCc-AGAa -3'
miRNA:   3'- aCGg--CGUGGCGCG---CGCGUUCGuuUCU- -5'
30404 3' -57.9 NC_006548.1 + 13106 0.67 0.369607
Target:  5'- aGCaGCAggUCGCGCGCGCcaaccAGGcCGAGGAg -3'
miRNA:   3'- aCGgCGU--GGCGCGCGCG-----UUC-GUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 13623 0.72 0.16858
Target:  5'- uUGCC--GCCGCcCGCGCAGGCAccGAGGa -3'
miRNA:   3'- -ACGGcgUGGCGcGCGCGUUCGU--UUCU- -5'
30404 3' -57.9 NC_006548.1 + 14648 0.68 0.318986
Target:  5'- gGCCGaggaaCGCGCGCGcCAGGCGc--- -3'
miRNA:   3'- aCGGCgug--GCGCGCGC-GUUCGUuucu -5'
30404 3' -57.9 NC_006548.1 + 16179 0.66 0.415801
Target:  5'- gUGCCGCACgGCuucgGCGCGguGcGCGGu-- -3'
miRNA:   3'- -ACGGCGUGgCG----CGCGCguU-CGUUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.