miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30404 3' -57.9 NC_006548.1 + 16500 0.67 0.406281
Target:  5'- aGCaGCAgCUGCaGCGCGUggGCuGGGAc -3'
miRNA:   3'- aCGgCGU-GGCG-CGCGCGuuCGuUUCU- -5'
30404 3' -57.9 NC_006548.1 + 16969 0.67 0.406281
Target:  5'- aUGCC-CGCCG-GCaUGCAGGCGGAGc -3'
miRNA:   3'- -ACGGcGUGGCgCGcGCGUUCGUUUCu -5'
30404 3' -57.9 NC_006548.1 + 19181 0.67 0.3969
Target:  5'- cGCUGCGCUGCcCGCGuUGAGCAc--- -3'
miRNA:   3'- aCGGCGUGGCGcGCGC-GUUCGUuucu -5'
30404 3' -57.9 NC_006548.1 + 19256 0.71 0.209983
Target:  5'- cGCCGgccUACCuGCG-GCGCAAGCgAAAGAa -3'
miRNA:   3'- aCGGC---GUGG-CGCgCGCGUUCG-UUUCU- -5'
30404 3' -57.9 NC_006548.1 + 20378 0.7 0.259859
Target:  5'- aGCCGuCACCGCGUaggGCGCuuccGCGAAc- -3'
miRNA:   3'- aCGGC-GUGGCGCG---CGCGuu--CGUUUcu -5'
30404 3' -57.9 NC_006548.1 + 21743 0.66 0.455201
Target:  5'- gGCCuggacGCGCCgGUGC-CGCAGGCGGAu- -3'
miRNA:   3'- aCGG-----CGUGG-CGCGcGCGUUCGUUUcu -5'
30404 3' -57.9 NC_006548.1 + 21803 0.67 0.3969
Target:  5'- cUGCgGCACCgGCGCGUcCAGGCc---- -3'
miRNA:   3'- -ACGgCGUGG-CGCGCGcGUUCGuuucu -5'
30404 3' -57.9 NC_006548.1 + 22518 0.7 0.227645
Target:  5'- cUGCCGCACCaaccacuaccgGCGCacagcCGCcGGCGGAGGa -3'
miRNA:   3'- -ACGGCGUGG-----------CGCGc----GCGuUCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 22972 0.71 0.215735
Target:  5'- cGCUuCAUCGUGCaGCGCGAGCGucuGGAu -3'
miRNA:   3'- aCGGcGUGGCGCG-CGCGUUCGUu--UCU- -5'
30404 3' -57.9 NC_006548.1 + 24514 0.69 0.272336
Target:  5'- uUGCCGCGCUGCaaGCGgccauauUGCAGGCGguugcccGAGAa -3'
miRNA:   3'- -ACGGCGUGGCG--CGC-------GCGUUCGU-------UUCU- -5'
30404 3' -57.9 NC_006548.1 + 25376 0.7 0.246548
Target:  5'- cUGCCGCcugggcaaugaGCUGCGCGaccaGCGaauggugggcGGCAAGGAc -3'
miRNA:   3'- -ACGGCG-----------UGGCGCGCg---CGU----------UCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 25425 0.74 0.130869
Target:  5'- uUGCCagGCCGUGCGCGCAGGCc---- -3'
miRNA:   3'- -ACGGcgUGGCGCGCGCGUUCGuuucu -5'
30404 3' -57.9 NC_006548.1 + 25935 0.67 0.3969
Target:  5'- cGUCGUAacggcCCGCGCGgGCcAGCAGGc- -3'
miRNA:   3'- aCGGCGU-----GGCGCGCgCGuUCGUUUcu -5'
30404 3' -57.9 NC_006548.1 + 26299 0.7 0.253131
Target:  5'- aG-CGCGCCGCGCGCuuuuacuaccuGCA-GCAGAGc -3'
miRNA:   3'- aCgGCGUGGCGCGCG-----------CGUuCGUUUCu -5'
30404 3' -57.9 NC_006548.1 + 26881 0.8 0.04431
Target:  5'- uUGCCGCAauccUCGCGCGCGCGugAGCcGGGAg -3'
miRNA:   3'- -ACGGCGU----GGCGCGCGCGU--UCGuUUCU- -5'
30404 3' -57.9 NC_006548.1 + 26958 0.69 0.295697
Target:  5'- cUGCUGCAagUCG-GCGCGCAGacGCAGAGc -3'
miRNA:   3'- -ACGGCGU--GGCgCGCGCGUU--CGUUUCu -5'
30404 3' -57.9 NC_006548.1 + 27094 0.67 0.360799
Target:  5'- aGCCaGUACgcaGCGCcucaaugcugcuGUGCAAGCGGGGAa -3'
miRNA:   3'- aCGG-CGUGg--CGCG------------CGCGUUCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 28600 0.67 0.406281
Target:  5'- cGCCGCgaccugGCCG-GCGC-CGAGCAGGa- -3'
miRNA:   3'- aCGGCG------UGGCgCGCGcGUUCGUUUcu -5'
30404 3' -57.9 NC_006548.1 + 28714 0.67 0.360799
Target:  5'- gGCCGgGCUGCGuUGCGUGAGUAcGAGc -3'
miRNA:   3'- aCGGCgUGGCGC-GCGCGUUCGU-UUCu -5'
30404 3' -57.9 NC_006548.1 + 28850 0.72 0.192987
Target:  5'- cUGCCGCAUCcagggucgcccagGCG-GCGCGAGCAcGGGc -3'
miRNA:   3'- -ACGGCGUGG-------------CGCgCGCGUUCGUuUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.