Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30404 | 5' | -58.8 | NC_006548.1 | + | 23884 | 0.68 | 0.304589 |
|
Target: 5'- cACGUUUGCCAucugccgggucGCGCcaCCGgcaugGCCGGCg -3' miRNA: 3'- uUGCGAAUGGU-----------CGCG--GGCa----UGGCCGa -5' |
|||||||
| 30404 | 5' | -58.8 | NC_006548.1 | + | 27169 | 0.69 | 0.238872 |
|
Target: 5'- -cCGCUUGCacagcagcauugaGGCGCUgCGUACUGGCUg -3' miRNA: 3'- uuGCGAAUGg------------UCGCGG-GCAUGGCCGA- -5' |
|||||||
| 30404 | 5' | -58.8 | NC_006548.1 | + | 15210 | 0.69 | 0.235107 |
|
Target: 5'- cGCGCUUGCCGGCcuGCgCGU-CCGGg- -3' miRNA: 3'- uUGCGAAUGGUCG--CGgGCAuGGCCga -5' |
|||||||
| 30404 | 5' | -58.8 | NC_006548.1 | + | 22026 | 0.7 | 0.200147 |
|
Target: 5'- uGACGCUauCCAGCGCaUCGgugaucACCGGCa -3' miRNA: 3'- -UUGCGAauGGUCGCG-GGCa-----UGGCCGa -5' |
|||||||
| 30404 | 5' | -58.8 | NC_006548.1 | + | 32856 | 0.77 | 0.065954 |
|
Target: 5'- uGACGCUUGCCAGCagcuggauGUCCGgccacACCGGCa -3' miRNA: 3'- -UUGCGAAUGGUCG--------CGGGCa----UGGCCGa -5' |
|||||||
| 30404 | 5' | -58.8 | NC_006548.1 | + | 1276 | 1.04 | 0.00051 |
|
Target: 5'- cAACGCUUACCAGCGCCCGUACCGGCUu -3' miRNA: 3'- -UUGCGAAUGGUCGCGGGCAUGGCCGA- -5' |
|||||||
| 30404 | 5' | -58.8 | NC_006548.1 | + | 1539 | 0.66 | 0.398015 |
|
Target: 5'- gAGCGCUaccacuccacUGCCGGCGaCCGccUCGGCg -3' miRNA: 3'- -UUGCGA----------AUGGUCGCgGGCauGGCCGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home