miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 17552 0.68 0.600969
Target:  5'- gGGuCGUccaguugcCGACGACAggcuGCAUCGCuucggccagcugCGGCGCc -3'
miRNA:   3'- -CC-GCA--------GCUGCUGU----UGUAGCG------------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 4124 0.66 0.765006
Target:  5'- cGGCGUCGAUGugGGC-UgGaCGACc- -3'
miRNA:   3'- -CCGCAGCUGCugUUGuAgCgGCUGcg -5'
30406 3' -53.9 NC_006548.1 + 15115 0.68 0.600969
Target:  5'- -aCGUCGAUGACGAUcUCGCCcagauccuuGGCGg -3'
miRNA:   3'- ccGCAGCUGCUGUUGuAGCGG---------CUGCg -5'
30406 3' -53.9 NC_006548.1 + 17466 0.66 0.72271
Target:  5'- cGGCGaacUCgGugGAaGGCGUcggCGCCGugGCc -3'
miRNA:   3'- -CCGC---AG-CugCUgUUGUA---GCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 14651 0.66 0.710786
Target:  5'- cGCGUCaGCGucGCGAUGUucuuugcCGCUGACGCc -3'
miRNA:   3'- cCGCAGcUGC--UGUUGUA-------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 4471 0.66 0.765006
Target:  5'- cGGUgcauGUCGGCGAaccgcuCGUCacuGCCGAUGUg -3'
miRNA:   3'- -CCG----CAGCUGCUguu---GUAG---CGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 15469 0.66 0.765006
Target:  5'- -uCGUCGGcCGGCAGCAUCuGCUG-CaGCu -3'
miRNA:   3'- ccGCAGCU-GCUGUUGUAG-CGGCuG-CG- -5'
30406 3' -53.9 NC_006548.1 + 4259 0.72 0.393947
Target:  5'- uGGCGUuguUGACGGCAuccagGCAUCGggccagcuCCGGCGUc -3'
miRNA:   3'- -CCGCA---GCUGCUGU-----UGUAGC--------GGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 23315 0.66 0.711874
Target:  5'- aGGCuacaUCGACGGCuuccucCAgCGCCGGgGCu -3'
miRNA:   3'- -CCGc---AGCUGCUGuu----GUaGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 32943 0.72 0.393947
Target:  5'- cGCGUCGGCGAuuCAACuggcgCGCCcggugcagcGGCGCu -3'
miRNA:   3'- cCGCAGCUGCU--GUUGua---GCGG---------CUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22080 0.71 0.451614
Target:  5'- cGGCGaCGAgGGCAugGU-GCCGAUGg -3'
miRNA:   3'- -CCGCaGCUgCUGUugUAgCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 17399 0.67 0.678931
Target:  5'- cGGCGcCGACGccuuccacCGAguUCGCCGAgGg -3'
miRNA:   3'- -CCGCaGCUGCu-------GUUguAGCGGCUgCg -5'
30406 3' -53.9 NC_006548.1 + 24967 0.67 0.678931
Target:  5'- aGUGUgcUGuACGACAccuugaACGcCGCCGACGCc -3'
miRNA:   3'- cCGCA--GC-UGCUGU------UGUaGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 36623 0.67 0.667843
Target:  5'- uGCGUCGAU-ACGgugccagcgccGCAUgagGCCGGCGCg -3'
miRNA:   3'- cCGCAGCUGcUGU-----------UGUAg--CGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 5310 0.67 0.667843
Target:  5'- aGCcUCGGCGuuGGCG-CGCCGGgGCu -3'
miRNA:   3'- cCGcAGCUGCugUUGUaGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 35194 0.67 0.667843
Target:  5'- aGGC--CGAgGGCGGCAUCGuuGGgcCGCu -3'
miRNA:   3'- -CCGcaGCUgCUGUUGUAGCggCU--GCG- -5'
30406 3' -53.9 NC_006548.1 + 27002 0.67 0.656721
Target:  5'- aGCGUCGGCGA----GUcCGCCGAUcaGCa -3'
miRNA:   3'- cCGCAGCUGCUguugUA-GCGGCUG--CG- -5'
30406 3' -53.9 NC_006548.1 + 18611 0.69 0.566666
Target:  5'- aGCGUgGGCGACAGCgAUauccugcaugugcUGCgCGAUGCg -3'
miRNA:   3'- cCGCAgCUGCUGUUG-UA-------------GCG-GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 2659 0.69 0.545885
Target:  5'- uGGUGcucaCGACcugGACAGCcUCGCCGAUGg -3'
miRNA:   3'- -CCGCa---GCUG---CUGUUGuAGCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 11073 0.7 0.524281
Target:  5'- gGGUGcgCGACGGCAAcCAUCGgUCGAC-Ca -3'
miRNA:   3'- -CCGCa-GCUGCUGUU-GUAGC-GGCUGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.