Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 2098 | 0.68 | 0.645575 |
Target: 5'- aGGCGUacaUGGCGA-AGCAccaCGCUGACGUc -3' miRNA: 3'- -CCGCA---GCUGCUgUUGUa--GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 11747 | 0.68 | 0.634417 |
Target: 5'- uGCG-CGGCGcGCGGCggCGCCGGgGUu -3' miRNA: 3'- cCGCaGCUGC-UGUUGuaGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 20063 | 0.68 | 0.634417 |
Target: 5'- aGGUG-CG-CGACGGCAUgcucuaUGCCGAgcCGCa -3' miRNA: 3'- -CCGCaGCuGCUGUUGUA------GCGGCU--GCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 30974 | 0.68 | 0.634417 |
Target: 5'- gGGCGacuUCGACGGCGcuuucuACGU-GCCaACGCu -3' miRNA: 3'- -CCGC---AGCUGCUGU------UGUAgCGGcUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 20897 | 0.68 | 0.631068 |
Target: 5'- gGGUGUCGACGGgcagacucacCAGCAgcUCGaucaccggagccuuCUGGCGCg -3' miRNA: 3'- -CCGCAGCUGCU----------GUUGU--AGC--------------GGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21434 | 0.68 | 0.623256 |
Target: 5'- uGGCGgcCGGCGGCAGaGUCGCgGcaacCGCu -3' miRNA: 3'- -CCGCa-GCUGCUGUUgUAGCGgCu---GCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 9625 | 0.68 | 0.62214 |
Target: 5'- cGCGUgcgccccUGGCGAUaccucgGACAUCuccuggcaccugGCCGACGCg -3' miRNA: 3'- cCGCA-------GCUGCUG------UUGUAG------------CGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 31504 | 0.68 | 0.612104 |
Target: 5'- cGCGaucUCGACGuGCAgguGCAgauaggcCGCCGugGCa -3' miRNA: 3'- cCGC---AGCUGC-UGU---UGUa------GCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 31016 | 0.68 | 0.612104 |
Target: 5'- gGGCGcCGAgGACGugAUUGUCGAa-- -3' miRNA: 3'- -CCGCaGCUgCUGUugUAGCGGCUgcg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21304 | 0.68 | 0.608761 |
Target: 5'- cGGUcgaGUaCGGCGGCAACGUcacucgcggugaugCGCUGACGg -3' miRNA: 3'- -CCG---CA-GCUGCUGUUGUA--------------GCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 15115 | 0.68 | 0.600969 |
Target: 5'- -aCGUCGAUGACGAUcUCGCCcagauccuuGGCGg -3' miRNA: 3'- ccGCAGCUGCUGUUGuAGCGG---------CUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17552 | 0.68 | 0.600969 |
Target: 5'- gGGuCGUccaguugcCGACGACAggcuGCAUCGCuucggccagcugCGGCGCc -3' miRNA: 3'- -CC-GCA--------GCUGCUGU----UGUAGCG------------GCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27633 | 0.69 | 0.589862 |
Target: 5'- cGGgGUCGGCGGCGAa---GgCGAgGCa -3' miRNA: 3'- -CCgCAGCUGCUGUUguagCgGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21395 | 0.69 | 0.586537 |
Target: 5'- gGGCGUCGGCcgucaGCGcaucaccgcgagugACGUUGCCGcCGUa -3' miRNA: 3'- -CCGCAGCUGc----UGU--------------UGUAGCGGCuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 5112 | 0.69 | 0.578791 |
Target: 5'- -aUGUCgGGCGACGugauACAUCGCCu-CGCg -3' miRNA: 3'- ccGCAG-CUGCUGU----UGUAGCGGcuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27216 | 0.69 | 0.578791 |
Target: 5'- aGGCGgCGACcgaGCAACGcgcUGCCGAgGCg -3' miRNA: 3'- -CCGCaGCUGc--UGUUGUa--GCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 30659 | 0.69 | 0.567766 |
Target: 5'- uGGCuGUCGugGGCuccuACcgUGgCGACGUu -3' miRNA: 3'- -CCG-CAGCugCUGu---UGuaGCgGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 18611 | 0.69 | 0.566666 |
Target: 5'- aGCGUgGGCGACAGCgAUauccugcaugugcUGCgCGAUGCg -3' miRNA: 3'- cCGCAgCUGCUGUUG-UA-------------GCG-GCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35878 | 0.69 | 0.566666 |
Target: 5'- uGGgGUCaugccaGACGACAACGaacugguUCGCCG-UGCc -3' miRNA: 3'- -CCgCAG------CUGCUGUUGU-------AGCGGCuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 23367 | 0.69 | 0.545885 |
Target: 5'- -cCGUCGAUGuaGCcuugGGCAUCGCUGACcGCg -3' miRNA: 3'- ccGCAGCUGC--UG----UUGUAGCGGCUG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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