Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30407 | 3' | -57.9 | NC_006548.1 | + | 37561 | 0.69 | 0.323157 |
Target: 5'- gGCCUGCCGGGguugucucguuUGCgacuUGGAcacgccagcccagccGUGGCGGCa -3' miRNA: 3'- gCGGAUGGUCC-----------ACG----ACCU---------------CGCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 12978 | 0.69 | 0.319967 |
Target: 5'- gCGCgaGCCAGaacGUGCUGGuGCG-CAGg -3' miRNA: 3'- -GCGgaUGGUC---CACGACCuCGCuGUCg -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 4805 | 0.69 | 0.28937 |
Target: 5'- gCGCCUGCguGa-GUUGGAG-GACGGCu -3' miRNA: 3'- -GCGGAUGguCcaCGACCUCgCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 27333 | 0.69 | 0.289369 |
Target: 5'- uCGCUcGCCuGGccgaGCaGGAGCGGCAGUu -3' miRNA: 3'- -GCGGaUGGuCCa---CGaCCUCGCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 32747 | 0.7 | 0.254413 |
Target: 5'- aGCCUugCAG--GCUGGGGCgGGCGGa -3' miRNA: 3'- gCGGAugGUCcaCGACCUCG-CUGUCg -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 18166 | 0.71 | 0.235151 |
Target: 5'- gGCCgucccagGCCAGGUGCaguucgcGGGGauguuCGACGGCa -3' miRNA: 3'- gCGGa------UGGUCCACGa------CCUC-----GCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 7292 | 0.71 | 0.23515 |
Target: 5'- gGUCaACCAGGcGCUGGGuGaUGACGGCa -3' miRNA: 3'- gCGGaUGGUCCaCGACCU-C-GCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 16465 | 0.71 | 0.229007 |
Target: 5'- uCGCCcgaucgACCAGGcUGCggcagagcaccUGGAGCaGCAGCu -3' miRNA: 3'- -GCGGa-----UGGUCC-ACG-----------ACCUCGcUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 32854 | 0.71 | 0.220635 |
Target: 5'- aCGCUUGCCAGcaGCUGGAuguccggccacacCGGCAGCg -3' miRNA: 3'- -GCGGAUGGUCcaCGACCUc------------GCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 13412 | 0.72 | 0.194947 |
Target: 5'- gGCggGCCAGGUcGCUGuuuGAGCGcCGGCg -3' miRNA: 3'- gCGgaUGGUCCA-CGAC---CUCGCuGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 29651 | 0.72 | 0.194947 |
Target: 5'- uGCCgcUGCCAgcGGUGCcGGuGCGGCAGg -3' miRNA: 3'- gCGG--AUGGU--CCACGaCCuCGCUGUCg -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 33383 | 0.75 | 0.126435 |
Target: 5'- cCGCCgACCuGGUGCUGGucgacacaguggcuGCGAcCAGCu -3' miRNA: 3'- -GCGGaUGGuCCACGACCu-------------CGCU-GUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 36827 | 0.79 | 0.060695 |
Target: 5'- gCGCCUgGCCGGGUGCUGGuGUGugGuGUg -3' miRNA: 3'- -GCGGA-UGGUCCACGACCuCGCugU-CG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 14369 | 0.82 | 0.038968 |
Target: 5'- uCGCUacgGCCAGaaGCUGGAGCGGCGGCu -3' miRNA: 3'- -GCGGa--UGGUCcaCGACCUCGCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 25708 | 0.82 | 0.035644 |
Target: 5'- gGC--ACCAGGUGCUGGAGCGGCAa- -3' miRNA: 3'- gCGgaUGGUCCACGACCUCGCUGUcg -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 22806 | 0.83 | 0.028932 |
Target: 5'- gGCgCUACCAGGUGCUGcucAGCGACGGUu -3' miRNA: 3'- gCG-GAUGGUCCACGACc--UCGCUGUCG- -5' |
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30407 | 3' | -57.9 | NC_006548.1 | + | 2284 | 1.12 | 0.000204 |
Target: 5'- aCGCCUACCAGGUGCUGGAGCGACAGCu -3' miRNA: 3'- -GCGGAUGGUCCACGACCUCGCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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