miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 19602 0.68 0.58507
Target:  5'- aGCCAUgGCCgAGCCGGcaucuggaUUGUGUAGGguCCg -3'
miRNA:   3'- -CGGUAgCGG-UUGGUC--------AACGCGUUC--GG- -5'
30417 3' -53.8 NC_006548.1 + 21284 0.68 0.58507
Target:  5'- uGCUgaUGCCGAUCAGcaGCGCAGuGCUa -3'
miRNA:   3'- -CGGuaGCGGUUGGUCaaCGCGUU-CGG- -5'
30417 3' -53.8 NC_006548.1 + 16039 0.68 0.58507
Target:  5'- aGCCGUCGUCuGCuUGGUgaccucGCGCAAGgCg -3'
miRNA:   3'- -CGGUAGCGGuUG-GUCAa-----CGCGUUCgG- -5'
30417 3' -53.8 NC_006548.1 + 5575 0.68 0.583933
Target:  5'- gGCCAg-GCCgGGCCGGcUUGCGCAacugguuGGCg -3'
miRNA:   3'- -CGGUagCGG-UUGGUC-AACGCGU-------UCGg -5'
30417 3' -53.8 NC_006548.1 + 35316 0.68 0.581661
Target:  5'- aCCAUCGCCGccagucgaggauucACCGGUUGgucCGgGGcGCCg -3'
miRNA:   3'- cGGUAGCGGU--------------UGGUCAAC---GCgUU-CGG- -5'
30417 3' -53.8 NC_006548.1 + 36962 0.68 0.562428
Target:  5'- gGCC--UGCagCAGCCGGUUGCGguGcGCCc -3'
miRNA:   3'- -CGGuaGCG--GUUGGUCAACGCguU-CGG- -5'
30417 3' -53.8 NC_006548.1 + 12591 0.68 0.562428
Target:  5'- aCCAg-GCCAGCUGGUcgGCGCcggaugccgAGGCCa -3'
miRNA:   3'- cGGUagCGGUUGGUCAa-CGCG---------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 31266 0.68 0.562428
Target:  5'- uGCCGggGCCAAUCAGUuccagaUG-GCGGGCa -3'
miRNA:   3'- -CGGUagCGGUUGGUCA------ACgCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 11672 0.68 0.562428
Target:  5'- uGUCAUCGCCGcaACCccg-GCGCc-GCCg -3'
miRNA:   3'- -CGGUAGCGGU--UGGucaaCGCGuuCGG- -5'
30417 3' -53.8 NC_006548.1 + 28842 0.68 0.551194
Target:  5'- uCCAggGUCGcCCAGgcgGCGCGAGCa -3'
miRNA:   3'- cGGUagCGGUuGGUCaa-CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 22306 0.68 0.551194
Target:  5'- uCgAUCGCCGauccgaacAUCGGUcUGCGCGguGGCCa -3'
miRNA:   3'- cGgUAGCGGU--------UGGUCA-ACGCGU--UCGG- -5'
30417 3' -53.8 NC_006548.1 + 32899 0.68 0.550074
Target:  5'- cGCCAgcggguaUCGCacuCGACCGuuugUGCGCcGGCCg -3'
miRNA:   3'- -CGGU-------AGCG---GUUGGUca--ACGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 16041 0.68 0.54003
Target:  5'- gGCCAU-GCCGACgAGUUcuggGCGCuGGGUCu -3'
miRNA:   3'- -CGGUAgCGGUUGgUCAA----CGCG-UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 22971 0.68 0.533368
Target:  5'- gGCCcaacUCGCCGccgcgcgacugaaucGCCAGUUcGUaGCAAGCUg -3'
miRNA:   3'- -CGGu---AGCGGU---------------UGGUCAA-CG-CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 30882 0.68 0.528943
Target:  5'- aGCCGUUGUCAAUCAGcUGCGgGAuUCg -3'
miRNA:   3'- -CGGUAGCGGUUGGUCaACGCgUUcGG- -5'
30417 3' -53.8 NC_006548.1 + 28589 0.68 0.528943
Target:  5'- gGCCggCGCCGAgCAGgacUGCGuCAcGCUg -3'
miRNA:   3'- -CGGuaGCGGUUgGUCa--ACGC-GUuCGG- -5'
30417 3' -53.8 NC_006548.1 + 22790 0.68 0.528943
Target:  5'- uUCAUCGCCGGCCGGcacgagcaccuucUGCGCcugaauggcagcgacGAGCUg -3'
miRNA:   3'- cGGUAGCGGUUGGUCa------------ACGCG---------------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 35027 0.69 0.50703
Target:  5'- -gCGUgGCUGACCAG--GCGCAGGgCCa -3'
miRNA:   3'- cgGUAgCGGUUGGUCaaCGCGUUC-GG- -5'
30417 3' -53.8 NC_006548.1 + 15159 0.69 0.50703
Target:  5'- gGCCAUUGgCGAacuCCAGga-CGUAGGCCg -3'
miRNA:   3'- -CGGUAGCgGUU---GGUCaacGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 30399 0.69 0.50703
Target:  5'- cGUCGgugcCGCCcaGGCCAGggGCGCGcagAGUCa -3'
miRNA:   3'- -CGGUa---GCGG--UUGGUCaaCGCGU---UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.