Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 985 | 0.66 | 0.38026 |
Target: 5'- uCGuCCUGCaGGCCAGCugCugaCGAGc- -3' miRNA: 3'- -GC-GGACGaCCGGUUGugGug-GCUCuu -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 2419 | 0.7 | 0.199993 |
Target: 5'- aGCCaUGCUGGCCAGCACguCGCCc---- -3' miRNA: 3'- gCGG-ACGACCGGUUGUG--GUGGcucuu -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 2479 | 0.71 | 0.184226 |
Target: 5'- gCGaCgUGCUGGCCAGCAUgGCUGGcGAAg -3' miRNA: 3'- -GC-GgACGACCGGUUGUGgUGGCU-CUU- -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 2919 | 0.66 | 0.40804 |
Target: 5'- gCGCCUGCaggcGGCCAagGCGCUgAUCGAcGAGu -3' miRNA: 3'- -GCGGACGa---CCGGU--UGUGG-UGGCU-CUU- -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 7579 | 0.66 | 0.40804 |
Target: 5'- uCGCCaaGUUGGCCGA-GCagGCCGAGGAg -3' miRNA: 3'- -GCGGa-CGACCGGUUgUGg-UGGCUCUU- -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 7755 | 1.05 | 0.000416 |
Target: 5'- gCGCCUGCUGGCCAACACCACCGAGAAc -3' miRNA: 3'- -GCGGACGACCGGUUGUGGUGGCUCUU- -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 8691 | 0.67 | 0.312593 |
Target: 5'- gGCCUGgaguccCUGGCCuGGCACCACgGAa-- -3' miRNA: 3'- gCGGAC------GACCGG-UUGUGGUGgCUcuu -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 12587 | 0.78 | 0.060068 |
Target: 5'- gGCCaGCUGGUCGGCGCCggauGCCGAGGc -3' miRNA: 3'- gCGGaCGACCGGUUGUGG----UGGCUCUu -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 15209 | 0.68 | 0.282344 |
Target: 5'- gCGCUUGCcGGCCuGCGCguCCGGGu- -3' miRNA: 3'- -GCGGACGaCCGGuUGUGguGGCUCuu -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 16457 | 0.66 | 0.402383 |
Target: 5'- uGCC-GCUGGCCccaGacaguuuucaccuggGCAUCGCUGAGGAu -3' miRNA: 3'- gCGGaCGACCGG---U---------------UGUGGUGGCUCUU- -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 20295 | 0.68 | 0.304807 |
Target: 5'- uGCCUuugaUGGCCGgcgGCACggCACCGAGGAa -3' miRNA: 3'- gCGGAcg--ACCGGU---UGUG--GUGGCUCUU- -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 22006 | 0.67 | 0.312593 |
Target: 5'- gGCgUGCUgGGCCGucGCACCGCCa---- -3' miRNA: 3'- gCGgACGA-CCGGU--UGUGGUGGcucuu -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 22327 | 0.66 | 0.38026 |
Target: 5'- gGUCUGCgcggUGGCCAGCGCguCCGuGu- -3' miRNA: 3'- gCGGACG----ACCGGUUGUGguGGCuCuu -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 23122 | 0.72 | 0.164917 |
Target: 5'- uGCCggaGCUGGCCgAACGuCCugguGCCGAGGAg -3' miRNA: 3'- gCGGa--CGACCGG-UUGU-GG----UGGCUCUU- -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 24704 | 0.66 | 0.38026 |
Target: 5'- aGCaCUGUcGGUgAGaACCACCGAGGAg -3' miRNA: 3'- gCG-GACGaCCGgUUgUGGUGGCUCUU- -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 24840 | 0.7 | 0.216922 |
Target: 5'- -uCCUGCUGGaCGGCAUcaaCACCGAGAc -3' miRNA: 3'- gcGGACGACCgGUUGUG---GUGGCUCUu -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 25867 | 0.73 | 0.135466 |
Target: 5'- cCGCCUGCUGGCCcGCGCgGgCCGuuacGAc -3' miRNA: 3'- -GCGGACGACCGGuUGUGgU-GGCu---CUu -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 27524 | 0.67 | 0.312593 |
Target: 5'- gGgCUGCUGuucGCCGGCAUCGCCGGu-- -3' miRNA: 3'- gCgGACGAC---CGGUUGUGGUGGCUcuu -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 28087 | 0.71 | 0.194611 |
Target: 5'- gGCCUGCaGGCCGAacucaACCGCCuGcAGAAc -3' miRNA: 3'- gCGGACGaCCGGUUg----UGGUGG-C-UCUU- -5' |
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30420 | 5' | -58.7 | NC_006548.1 | + | 28136 | 0.67 | 0.312593 |
Target: 5'- gGCCUGCaGGCCGccaGCCGCCugcuguGAGGc -3' miRNA: 3'- gCGGACGaCCGGUug-UGGUGG------CUCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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