Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 25867 | 0.73 | 0.135466 |
Target: 5'- cCGCCUGCUGGCCcGCGCgGgCCGuuacGAc -3' miRNA: 3'- -GCGGACGACCGGuUGUGgU-GGCu---CUu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 22327 | 0.66 | 0.38026 |
Target: 5'- gGUCUGCgcggUGGCCAGCGCguCCGuGu- -3' miRNA: 3'- gCGGACG----ACCGGUUGUGguGGCuCuu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 985 | 0.66 | 0.38026 |
Target: 5'- uCGuCCUGCaGGCCAGCugCugaCGAGc- -3' miRNA: 3'- -GC-GGACGaCCGGUUGugGug-GCUCuu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 35529 | 0.67 | 0.353773 |
Target: 5'- gGCCUGCUGGaCCAggcgucauaucGCAagGCCGcAGAu -3' miRNA: 3'- gCGGACGACC-GGU-----------UGUggUGGC-UCUu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 22006 | 0.67 | 0.312593 |
Target: 5'- gGCgUGCUgGGCCGucGCACCGCCa---- -3' miRNA: 3'- gCGgACGA-CCGGU--UGUGGUGGcucuu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 27524 | 0.67 | 0.312593 |
Target: 5'- gGgCUGCUGuucGCCGGCAUCGCCGGu-- -3' miRNA: 3'- gCgGACGAC---CGGUUGUGGUGGCUcuu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 32402 | 0.68 | 0.304807 |
Target: 5'- aGCCUgGCcGGCCAGCcgucGCCGCCGuuGc -3' miRNA: 3'- gCGGA-CGaCCGGUUG----UGGUGGCucUu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 36588 | 0.69 | 0.261213 |
Target: 5'- aCGCC-GC-GGCCGGCACCGCggugcucgcgCGGGGAu -3' miRNA: 3'- -GCGGaCGaCCGGUUGUGGUG----------GCUCUU- -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 28904 | 0.69 | 0.241387 |
Target: 5'- cCGUCgagGC-GGCCGGCGCCGagaUCGAGAAg -3' miRNA: 3'- -GCGGa--CGaCCGGUUGUGGU---GGCUCUU- -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 29418 | 0.7 | 0.231336 |
Target: 5'- aGCCgaucGCUGGCCGACGuuGCCGcgcagcagcuggcccAGAAg -3' miRNA: 3'- gCGGa---CGACCGGUUGUggUGGC---------------UCUU- -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 24840 | 0.7 | 0.216922 |
Target: 5'- -uCCUGCUGGaCGGCAUcaaCACCGAGAc -3' miRNA: 3'- gcGGACGACCgGUUGUG---GUGGCUCUu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 2419 | 0.7 | 0.199993 |
Target: 5'- aGCCaUGCUGGCCAGCACguCGCCc---- -3' miRNA: 3'- gCGG-ACGACCGGUUGUG--GUGGcucuu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 28087 | 0.71 | 0.194611 |
Target: 5'- gGCCUGCaGGCCGAacucaACCGCCuGcAGAAc -3' miRNA: 3'- gCGGACGaCCGGUUg----UGGUGG-C-UCUU- -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 23122 | 0.72 | 0.164917 |
Target: 5'- uGCCggaGCUGGCCgAACGuCCugguGCCGAGGAg -3' miRNA: 3'- gCGGa--CGACCGG-UUGU-GG----UGGCUCUU- -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 15209 | 0.68 | 0.282344 |
Target: 5'- gCGCUUGCcGGCCuGCGCguCCGGGu- -3' miRNA: 3'- -GCGGACGaCCGGuUGUGguGGCUCuu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 29155 | 0.71 | 0.196748 |
Target: 5'- gGCCUGCUGGgCGGC-CUggauacucgacuccuGCCGAGAc -3' miRNA: 3'- gCGGACGACCgGUUGuGG---------------UGGCUCUu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 2479 | 0.71 | 0.184226 |
Target: 5'- gCGaCgUGCUGGCCAGCAUgGCUGGcGAAg -3' miRNA: 3'- -GC-GgACGACCGGUUGUGgUGGCU-CUU- -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 33033 | 0.72 | 0.164917 |
Target: 5'- aGCCgGCcGGCCAGCGCCGCUGcaccGGGc -3' miRNA: 3'- gCGGaCGaCCGGUUGUGGUGGC----UCUu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 12587 | 0.78 | 0.060068 |
Target: 5'- gGCCaGCUGGUCGGCGCCggauGCCGAGGc -3' miRNA: 3'- gCGGaCGACCGGUUGUGG----UGGCUCUu -5' |
|||||||
30420 | 5' | -58.7 | NC_006548.1 | + | 2919 | 0.66 | 0.40804 |
Target: 5'- gCGCCUGCaggcGGCCAagGCGCUgAUCGAcGAGu -3' miRNA: 3'- -GCGGACGa---CCGGU--UGUGG-UGGCU-CUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home