miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30422 3' -53.1 NC_006548.1 + 15843 0.67 0.598675
Target:  5'- cCGGUgGCGucgaUGCAGAugCGCucaCAGCg -3'
miRNA:   3'- aGUCGgCGU----ACGUCUugGCGua-GUUG- -5'
30422 3' -53.1 NC_006548.1 + 37849 0.68 0.575557
Target:  5'- cCAGCCGCAgauUGCAGAugCcagGguUCggUg -3'
miRNA:   3'- aGUCGGCGU---ACGUCUugG---CguAGuuG- -5'
30422 3' -53.1 NC_006548.1 + 21432 0.68 0.564072
Target:  5'- gCGGCCgGCG-GCAGAGUCGCggCAACc -3'
miRNA:   3'- aGUCGG-CGUaCGUCUUGGCGuaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 28852 0.68 0.541293
Target:  5'- uUCuGCCGCAUcCAGggUCGCccaggCGGCg -3'
miRNA:   3'- -AGuCGGCGUAcGUCuuGGCGua---GUUG- -5'
30422 3' -53.1 NC_006548.1 + 20538 0.68 0.541293
Target:  5'- --cGCCGC-UGCGGAagaGCCGCAg-GGCa -3'
miRNA:   3'- aguCGGCGuACGUCU---UGGCGUagUUG- -5'
30422 3' -53.1 NC_006548.1 + 24457 0.68 0.541293
Target:  5'- -uGGCCGCuUGCAGcgcggcaaGACCGCcacuAUUAACa -3'
miRNA:   3'- agUCGGCGuACGUC--------UUGGCG----UAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36392 0.69 0.530019
Target:  5'- cUCAGCCGCGUG-GGAuCUGCAcgguUCGAa -3'
miRNA:   3'- -AGUCGGCGUACgUCUuGGCGU----AGUUg -5'
30422 3' -53.1 NC_006548.1 + 22201 0.69 0.507738
Target:  5'- uUCAGCCGCGcuucgccgaUGUAGA-UCGCGUCc-- -3'
miRNA:   3'- -AGUCGGCGU---------ACGUCUuGGCGUAGuug -5'
30422 3' -53.1 NC_006548.1 + 30857 0.69 0.507738
Target:  5'- gCGGCCGuUAUGCGGGcagcagugaaGCCGUugucaAUCAGCu -3'
miRNA:   3'- aGUCGGC-GUACGUCU----------UGGCG-----UAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36954 0.69 0.485864
Target:  5'- gCAGCCGguUGC-GGugCGCccacgacacgGUCAGCa -3'
miRNA:   3'- aGUCGGCguACGuCUugGCG----------UAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 14374 0.7 0.479388
Target:  5'- uUCGGCCuggcucgggaacugcGCcUGCAGGuCCGCgAUCAGCu -3'
miRNA:   3'- -AGUCGG---------------CGuACGUCUuGGCG-UAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 28590 0.7 0.475095
Target:  5'- -uGGCCgGCGccgaGCAGGACUGCGUCAc- -3'
miRNA:   3'- agUCGG-CGUa---CGUCUUGGCGUAGUug -5'
30422 3' -53.1 NC_006548.1 + 18059 0.7 0.475095
Target:  5'- cCAGCCGCAUaGCuGGugCGCAgauUCGu- -3'
miRNA:   3'- aGUCGGCGUA-CGuCUugGCGU---AGUug -5'
30422 3' -53.1 NC_006548.1 + 34088 0.7 0.464448
Target:  5'- aCAGCCGgGUGCAGAucaaaugccgGCUGC-UCggUa -3'
miRNA:   3'- aGUCGGCgUACGUCU----------UGGCGuAGuuG- -5'
30422 3' -53.1 NC_006548.1 + 4898 0.7 0.464448
Target:  5'- uUCGGCCGCuccagugGCGcAACCGCAgccaucauggcuUCGGCa -3'
miRNA:   3'- -AGUCGGCGua-----CGUcUUGGCGU------------AGUUG- -5'
30422 3' -53.1 NC_006548.1 + 27329 0.7 0.464448
Target:  5'- gCGGCCGCAuccUGCuuGGCUGUuUCAGCa -3'
miRNA:   3'- aGUCGGCGU---ACGucUUGGCGuAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 29726 0.7 0.464448
Target:  5'- gCAGCCGCAccUGCcgcaccGGcACCGCuggCAGCg -3'
miRNA:   3'- aGUCGGCGU--ACG------UCuUGGCGua-GUUG- -5'
30422 3' -53.1 NC_006548.1 + 33656 0.7 0.453926
Target:  5'- aCAGCgacaGCGUGCAGAucacccacgaaACCgacaccgacgGCAUCAGCa -3'
miRNA:   3'- aGUCGg---CGUACGUCU-----------UGG----------CGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 18430 0.7 0.453926
Target:  5'- cCAGCaGCuucUGCAGAACCGC-UCggUg -3'
miRNA:   3'- aGUCGgCGu--ACGUCUUGGCGuAGuuG- -5'
30422 3' -53.1 NC_006548.1 + 12149 0.7 0.443534
Target:  5'- cCGGCCaGCA-GCAGGA--GCAUCAGCg -3'
miRNA:   3'- aGUCGG-CGUaCGUCUUggCGUAGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.