miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30423 3' -53.4 NC_006548.1 + 13265 0.66 0.765829
Target:  5'- cGCUCGguaggCGGUCGAUacauGGGCGAuuCGCu -3'
miRNA:   3'- -CGGGCacua-GUUAGCUG----UCCGCU--GCG- -5'
30423 3' -53.4 NC_006548.1 + 35092 0.66 0.744663
Target:  5'- aGCUgGUcgaGAUCAa--GGCAGGUGAuCGCa -3'
miRNA:   3'- -CGGgCA---CUAGUuagCUGUCCGCU-GCG- -5'
30423 3' -53.4 NC_006548.1 + 18125 0.66 0.744663
Target:  5'- gGCCUgGUGAUCcAUgcCGACAauccuugguGGCGaACGCa -3'
miRNA:   3'- -CGGG-CACUAGuUA--GCUGU---------CCGC-UGCG- -5'
30423 3' -53.4 NC_006548.1 + 31546 0.66 0.744663
Target:  5'- gGCuCCGUaAUCuAUCaGGCAGGCcaGAUGCu -3'
miRNA:   3'- -CG-GGCAcUAGuUAG-CUGUCCG--CUGCG- -5'
30423 3' -53.4 NC_006548.1 + 35709 0.66 0.733894
Target:  5'- aUCCGUGA-CGAcuaCGACGucGCGACGCu -3'
miRNA:   3'- cGGGCACUaGUUa--GCUGUc-CGCUGCG- -5'
30423 3' -53.4 NC_006548.1 + 7999 0.66 0.723017
Target:  5'- cGCgCCG-GAUgAu---GCAGGCGGCGCu -3'
miRNA:   3'- -CG-GGCaCUAgUuagcUGUCCGCUGCG- -5'
30423 3' -53.4 NC_006548.1 + 35249 0.67 0.712044
Target:  5'- aCCgGUGaAUCc-UCGACuGGCGGCGa -3'
miRNA:   3'- cGGgCAC-UAGuuAGCUGuCCGCUGCg -5'
30423 3' -53.4 NC_006548.1 + 4387 0.67 0.700989
Target:  5'- cCCCcUGAUCAcAUCGGCAG-UGACGa -3'
miRNA:   3'- cGGGcACUAGU-UAGCUGUCcGCUGCg -5'
30423 3' -53.4 NC_006548.1 + 28773 0.67 0.689863
Target:  5'- aGCCCGUGcUCGcgCcGCcuGGGCGACc- -3'
miRNA:   3'- -CGGGCACuAGUuaGcUG--UCCGCUGcg -5'
30423 3' -53.4 NC_006548.1 + 26741 0.67 0.688747
Target:  5'- -aCCGUGuaggugauGUCGGUCGACucgauguggaaagAGGCGAaGCa -3'
miRNA:   3'- cgGGCAC--------UAGUUAGCUG-------------UCCGCUgCG- -5'
30423 3' -53.4 NC_006548.1 + 27420 0.67 0.677557
Target:  5'- cGCCCGgaaaugcucGGUCAAcugccgcuccugcUCGGcCAGGCGA-GCg -3'
miRNA:   3'- -CGGGCa--------CUAGUU-------------AGCU-GUCCGCUgCG- -5'
30423 3' -53.4 NC_006548.1 + 35861 0.67 0.675313
Target:  5'- uGCCCGUGcgaagaaugccggcgCGAUccgcgCGGCcGGCGGCGUg -3'
miRNA:   3'- -CGGGCACua-------------GUUA-----GCUGuCCGCUGCG- -5'
30423 3' -53.4 NC_006548.1 + 22578 0.67 0.667447
Target:  5'- cGCCgguaGUGGUUggUgCGGCAGGUGcagcCGCu -3'
miRNA:   3'- -CGGg---CACUAGuuA-GCUGUCCGCu---GCG- -5'
30423 3' -53.4 NC_006548.1 + 33876 0.68 0.610992
Target:  5'- gGCCgGUGAgCGA-CGAUGGaCGGCGCa -3'
miRNA:   3'- -CGGgCACUaGUUaGCUGUCcGCUGCG- -5'
30423 3' -53.4 NC_006548.1 + 24792 0.68 0.610992
Target:  5'- uGCCgGUGAcguUCAGcaguUCGAuCAGGCcgGACGUu -3'
miRNA:   3'- -CGGgCACU---AGUU----AGCU-GUCCG--CUGCG- -5'
30423 3' -53.4 NC_006548.1 + 12334 0.68 0.610992
Target:  5'- gGCCCuGUGcgC---CGACGGGCGA-GCg -3'
miRNA:   3'- -CGGG-CACuaGuuaGCUGUCCGCUgCG- -5'
30423 3' -53.4 NC_006548.1 + 3409 0.69 0.588472
Target:  5'- aGCUCG-GuAUCAAUCuGCAGGuCGAuCGCg -3'
miRNA:   3'- -CGGGCaC-UAGUUAGcUGUCC-GCU-GCG- -5'
30423 3' -53.4 NC_006548.1 + 11761 0.69 0.588472
Target:  5'- cGUCCaGcUGGUCAugcgCGGCGcgcGGCGGCGCc -3'
miRNA:   3'- -CGGG-C-ACUAGUua--GCUGU---CCGCUGCG- -5'
30423 3' -53.4 NC_006548.1 + 12192 0.69 0.588472
Target:  5'- gGCCCGcggGAUCucAUCGGCcuuGGcCGACGa -3'
miRNA:   3'- -CGGGCa--CUAGu-UAGCUGu--CC-GCUGCg -5'
30423 3' -53.4 NC_006548.1 + 8929 0.7 0.522113
Target:  5'- uGCCCcagGUGGUCGAUgGcCAGGCGcucgacccCGCg -3'
miRNA:   3'- -CGGG---CACUAGUUAgCuGUCCGCu-------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.