Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30423 | 3' | -53.4 | NC_006548.1 | + | 20441 | 0.71 | 0.468088 |
Target: 5'- gGCCCGU--UCGGcgccuucgcgcUCGacgaagaagucacGCAGGCGGCGCa -3' miRNA: 3'- -CGGGCAcuAGUU-----------AGC-------------UGUCCGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 29907 | 0.71 | 0.438675 |
Target: 5'- gGCgCUGUGcggCAcgCGACGGGCGGCa- -3' miRNA: 3'- -CG-GGCACua-GUuaGCUGUCCGCUGcg -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 21224 | 0.72 | 0.419018 |
Target: 5'- uGCCaugGAUCAcgAUaCGGCGGGCGGCGa -3' miRNA: 3'- -CGGgcaCUAGU--UA-GCUGUCCGCUGCg -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 36276 | 0.73 | 0.363393 |
Target: 5'- -aCCGUGAUCucgCGGCGGcacugaGCGAUGCa -3' miRNA: 3'- cgGGCACUAGuuaGCUGUC------CGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 37408 | 0.73 | 0.337564 |
Target: 5'- gGCCUGgccgcUAGUCGGCAgcguGGCGACGCg -3' miRNA: 3'- -CGGGCacua-GUUAGCUGU----CCGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 2712 | 0.81 | 0.107114 |
Target: 5'- cGUUCGUcAUCGAUCuGCAGGCGGCGCa -3' miRNA: 3'- -CGGGCAcUAGUUAGcUGUCCGCUGCG- -5' |
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30423 | 3' | -53.4 | NC_006548.1 | + | 9305 | 1.15 | 0.000435 |
Target: 5'- aGCCCGUGAUCAAUCGACAGGCGACGCg -3' miRNA: 3'- -CGGGCACUAGUUAGCUGUCCGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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