miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
30423	3'	-53.4	NC_006548.1	+	20441	0.71	0.468088
	Target:  5'- gGCCCGU--UCGGcgccuucgcgcUCGacgaagaagucacGCAGGCGGCGCa -3' miRNA:   3'- -CGGGCAcuAGUU-----------AGC-------------UGUCCGCUGCG- -5'
30423	3'	-53.4	NC_006548.1	+	29907	0.71	0.438675
	Target:  5'- gGCgCUGUGcggCAcgCGACGGGCGGCa- -3' miRNA:   3'- -CG-GGCACua-GUuaGCUGUCCGCUGcg -5'
30423	3'	-53.4	NC_006548.1	+	21224	0.72	0.419018
	Target:  5'- uGCCaugGAUCAcgAUaCGGCGGGCGGCGa -3' miRNA:   3'- -CGGgcaCUAGU--UA-GCUGUCCGCUGCg -5'
30423	3'	-53.4	NC_006548.1	+	36276	0.73	0.363393
	Target:  5'- -aCCGUGAUCucgCGGCGGcacugaGCGAUGCa -3' miRNA:   3'- cgGGCACUAGuuaGCUGUC------CGCUGCG- -5'
30423	3'	-53.4	NC_006548.1	+	37408	0.73	0.337564
	Target:  5'- gGCCUGgccgcUAGUCGGCAgcguGGCGACGCg -3' miRNA:   3'- -CGGGCacua-GUUAGCUGU----CCGCUGCG- -5'
30423	3'	-53.4	NC_006548.1	+	2712	0.81	0.107114
	Target:  5'- cGUUCGUcAUCGAUCuGCAGGCGGCGCa -3' miRNA:   3'- -CGGGCAcUAGUUAGcUGUCCGCUGCG- -5'
30423	3'	-53.4	NC_006548.1	+	9305	1.15	0.000435
	Target:  5'- aGCCCGUGAUCAAUCGACAGGCGACGCg -3' miRNA:   3'- -CGGGCACUAGUUAGCUGUCCGCUGCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home