miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30429 3' -54.6 NC_006548.1 + 29755 0.65 0.694706
Target:  5'- uGAUCGAggacagccagccgCCAcUA-CCGGCaGCCGCa -3'
miRNA:   3'- gCUAGCUa------------GGUuAUcGGCCGgUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 14340 0.66 0.68804
Target:  5'- gCGAUCagcucGUCCAGggucauCCGGCCAUCGg -3'
miRNA:   3'- -GCUAGc----UAGGUUauc---GGCCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 13638 0.66 0.68804
Target:  5'- uGGUUGAg-CAGcAGCUuGCCGCCGCc -3'
miRNA:   3'- gCUAGCUagGUUaUCGGcCGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 37095 0.66 0.68804
Target:  5'- gCGGguaGGUCCAGgucguGCCGGUCaaGCCGg -3'
miRNA:   3'- -GCUag-CUAGGUUau---CGGCCGG--UGGCg -5'
30429 3' -54.6 NC_006548.1 + 22361 0.66 0.676887
Target:  5'- -aGUCGGUCaaggaaCUGGUCACCGCa -3'
miRNA:   3'- gcUAGCUAGguuaucGGCCGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 32964 0.66 0.665689
Target:  5'- gCGccCGGUgCAGcggcgcUGGCCGGCCGgcucCCGCu -3'
miRNA:   3'- -GCuaGCUAgGUU------AUCGGCCGGU----GGCG- -5'
30429 3' -54.6 NC_006548.1 + 34061 0.66 0.665689
Target:  5'- gGAUCGA-CgAGgugaacUGGCCGGCCgacaGCCGg -3'
miRNA:   3'- gCUAGCUaGgUU------AUCGGCCGG----UGGCg -5'
30429 3' -54.6 NC_006548.1 + 12601 0.66 0.654459
Target:  5'- aCGGaaUCGAaCCAGgccAGCUGGUCGgCGCc -3'
miRNA:   3'- -GCU--AGCUaGGUUa--UCGGCCGGUgGCG- -5'
30429 3' -54.6 NC_006548.1 + 32882 0.66 0.654459
Target:  5'- --cUCGA-CCGuuuGUGcGCCGGCCGCgGUg -3'
miRNA:   3'- gcuAGCUaGGU---UAU-CGGCCGGUGgCG- -5'
30429 3' -54.6 NC_006548.1 + 34730 0.66 0.643207
Target:  5'- gGAUCG-UCCucgGGaCCGGUCACgaGCg -3'
miRNA:   3'- gCUAGCuAGGuuaUC-GGCCGGUGg-CG- -5'
30429 3' -54.6 NC_006548.1 + 14282 0.66 0.639828
Target:  5'- gGAccUGGUCCGGUAGCCGGgagaucgaugauuuCCGCCcCa -3'
miRNA:   3'- gCUa-GCUAGGUUAUCGGCC--------------GGUGGcG- -5'
30429 3' -54.6 NC_006548.1 + 22179 0.67 0.63645
Target:  5'- aGAUCGcGUCCAGUuccAGCagcuccugcaggaaGGCCAUCGg -3'
miRNA:   3'- gCUAGC-UAGGUUA---UCGg-------------CCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 22306 0.67 0.631944
Target:  5'- uCGAUcgcCGAUCCGAacaUCGGUCugCGCg -3'
miRNA:   3'- -GCUA---GCUAGGUUaucGGCCGGugGCG- -5'
30429 3' -54.6 NC_006548.1 + 5643 0.67 0.631944
Target:  5'- gGGUgGGUCUucuugAGCCaGGCCAUCGa -3'
miRNA:   3'- gCUAgCUAGGuua--UCGG-CCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 6942 0.67 0.620681
Target:  5'- -uAUUGGcgCCGG-AGCCGGUCACCGa -3'
miRNA:   3'- gcUAGCUa-GGUUaUCGGCCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 12327 0.67 0.620681
Target:  5'- gGAUCGccggCCuGUAuCCGGCCGCCcucgGCa -3'
miRNA:   3'- gCUAGCua--GGuUAUcGGCCGGUGG----CG- -5'
30429 3' -54.6 NC_006548.1 + 20391 0.67 0.609429
Target:  5'- gGAucUCGGUCag--AGCC-GUCACCGCg -3'
miRNA:   3'- gCU--AGCUAGguuaUCGGcCGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 18516 0.67 0.598198
Target:  5'- -aGUCGGUUUgAAUGGCggUGGCCACCGa -3'
miRNA:   3'- gcUAGCUAGG-UUAUCG--GCCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 11140 0.67 0.598198
Target:  5'- uGGUCGA-CCGAUGGuuG-CCGUCGCg -3'
miRNA:   3'- gCUAGCUaGGUUAUCggCcGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 20687 0.67 0.598198
Target:  5'- aCGAgcgCGAg-CAAcuGCUGGCCACcCGCg -3'
miRNA:   3'- -GCUa--GCUagGUUauCGGCCGGUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.